BAC Information

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BAC

Clone NameMSMg01-422B10
Chromosome18 (Build37)
Map Location 49,638,583 - 49,638,752
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545470
Downstream geneDtwd2, Dmxl1, Tnfaip8, Hsd17b4, LOC626721, LOC667233, Gm93
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422B10.T7 (MSMg01no422_b10.b1)MSMg01-422B10.TJ (MSMg01no422_b10.g1)
ACCAG516563AG516564
length732849
length of high quality
(start - end)
517 (65 - 581)174 (71 - 244)
definitionCHROMAT_FILE: MSMg01no422_b10.b1 PHD_FILE: MSMg01no422_b10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:28 2005CHROMAT_FILE: MSMg01no422_b10.g1 PHD_FILE: MSMg01no422_b10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AATAACAGATTCAACAGAAAACCTACAAACTCATGAAAACTGAACATCTA
CTCAGTGATGACTGGGTCAGGGAAGAAATGAATAAAGAAATTAGATACTT
TCTAGAATTCAATCAAAATGAGAGAACATACTCAAACTTATGGGATATAA
TGGAAAAAGTGCTAAGAGGAAAGTTGATAGCACTAAGTGCCTTCATAAAA
AAAATTGGAGAAATCTCACCGGGTGATGGTGGCACATGCCTTTAATCCCA
GTACTTGGGAAGCAGAGGCAGGCAGATTTCTAAGTTCAAGGCCAGCCTGG
TCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTC
TCGAAAAACAAAACAAAACAAAAAGAAAACAAACAAAAAAAAAAAAAAGA
AGAAATCTCAACAGCACATTTAAAAGTTCTAAAACAAAAAGAAGCAAACA
CCCACAAGAAGAGTAGACAGCAGCGAATAATCAAACTGAGGACTGAAATC
AATGAATTAGAAACAAAGGGAACAATTAGAAGACTCAACAAAACCAAGAG
CTGATTCTTTGANGAAATCAACAAGACAGACCAACCCTTAGCCCAACTGA
TTGAAAGACAGAGAGACAGTACCCATATTTAACAAATCTGAAGAGAAAAG
AACAAANCCAGACCCTGAGGGAAACCCAAGAA
ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGGCTTTAGTCCTTGTCAATTACAAACCAG
GTCATATTTGTGATTACTCTAAGAGGAATGTTGAGGCTGATATAGAAAGG
AATAATCAAGGTTATATCAATGCCAAAGTAAGAGGGAGGGGGGAGAGCGA
AAGGGTGGTCGAGTGGATGGGGTTAAGGAGAAAAGGGAAGAGGNNNNNNT
TTTTTTTNNNNNTNNTTTTTTTTTTTNNTTTTTTTTTTTTTNNNNNNTNN
NNNNNTNNTNNTTTNTTTTTTTTTTTTTTNNNNNNNNNNNNNNTNNNTNN
TTNNTTTTTTTTTTTTTTTTCCTCTTTTTCTNTTCTTTTNTNNTCTCTTT
CCTTTTTTTTCCCTTTCTCTTCCCCCCCCCCTCCCCTTCTTTTCTCTCTT
TCTTCTTCTCTTTCCTCGTTCGTTTTCTCTTTTCTTCCTCTCTCTTTTTT
CCCCTTTCCTCTCTCTTCTCCTTCCCTCTCTTNTTTCTCCTTTCTCCCCT
CCTCTCTCTCTTCCTTCCTCTTTCCTCCTCTTTCCTTTTTCTTTTTCTCT
TCTTCTCTTCTCTCTTCTTCCTTCTTCTTTTTCTCCCCTTTCTTCCTCTC
TCTTTTTCTCTCCTCTTTCTNCCCCTTCTTCCTCTCCCCCTTCTTTTCTT
CTTCTTCCTCCCTCCTCTCTCTTCTTGTTTCTCTTCTCCCTTCCTTTTTT
CTGTGTCGTTNTGTGTTCGTCCTCTGCCGTTTCCTCTCTCCCTCCCTGTC
TCCCCCGCTCTTCTCTCCTTCTCTCTGTCTTTTCTTCTTCTGTCTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_b10.g1 MSMg01no422_b10.g1 CHROMAT_FILE:
MSMg01no422_b10.g1 PHD_FILE: MSMg01no422_b10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:28 2005
         (174 letters)



>mm_chr18_49638383_49638955
          Length = 573

 Score =  315 bits (163), Expect = 8e-91
 Identities = 169/171 (98%), Gaps = 1/171 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggctttagtccttgtcaattacaaaccaggtcatatttgtgattactctaagaggaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tggctttagtccttgtcaattacaaaccaggtcatatttgtgattactctaagaggaatg 311

                                                                       
Query: 61  ttgaggctgatatagaaaggaataatcaaggttatatcaatgccaaagtaagagggaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 310 ttgaggctgatatagaaaggaataatcaaggttatatcaatgccaaagtaagaggga-gg 252

                                                              
Query: 121 gggagagcgaaagggtggtcgagtggatggggttaaggagaaaagggaaga 171
           ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 gggagggcgaaagggtggtcgagtggatggggttaaggagaaaagggaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 573
Length adjustment: 8
Effective length of query: 166
Effective length of database: 565
Effective search space:    93790
Effective search space used:    93790
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)