BAC Information

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BAC

Clone NameMSMg01-423A06
Chromosome18 (Build37)
Map Location 79,497,340 - 79,497,916
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc14a2, EG620155, Setbp1
Downstream geneLOC100039242, LOC100039250, LOC383311, LOC433204, LOC545267, LOC100040632, LOC620963, LOC100040604, LOC620692, LOC100040593, LOC639825, Pard6g, Zfp508, LOC665009, LOC100039311, 1110032A13Rik, Txnl4, 1810005K13Rik, Pqlc1, Kcng2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423A06.T7 (MSMg01no423_a06.b1)MSMg01-423A06.TJ (MSMg01no423_a06.g1)
ACCAG517270AG517271
length744740
length of high quality
(start - end)
514 (56 - 569)579 (64 - 642)
definitionCHROMAT_FILE: MSMg01no423_a06.b1 PHD_FILE: MSMg01no423_a06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:35 2005CHROMAT_FILE: MSMg01no423_a06.g1 PHD_FILE: MSMg01no423_a06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTAATA
TTCCTGCCTATTCAGTGATATTCAGAATTGCCTCTGGTATTACAATATCA
CTTAGAATAAAAGCCAAGTTGCTCCCATATACAGGAATTCACAATGGTTT
AGGAAGTAGATTGGGCTGTGGTTTTAGAGTATTGCATTATTCATGAGATG
GTTAGCTAGAACGGAACTCCCTAATTAGAACCATGACTTGGGTGTGAAAG
CCCTTGCCCTAGGAGTGTAAAGACCTCACACCTGGCTTCTAAGACTATAG
CTGACCTTATATAGGGCTGACTTTGTCTCAGTTATTTTATTGCCCAGTTC
CTGCCAGTCTTTGTGTTTACATTCCTCTGTTTTGTGTAAGAGTCATTGAG
CATCCGGTAACCTCATTTGTACCTTGCCGATGTGTCACCTAACTTCCCTA
TTTTCTTCCGTATAAAAAGTTTGATGCTCAATTTGACAAATTACATTCAG
ATTCTACACAACCTCTCCTGTGTGCATCTGTCTGTCATTTCATCCAACAC
TTTGCCCATTTGCGACTAGAGACCCATTCCACGCAGACAATGGGGCCCAC
AGGGTCTGCGGCCAAGCTCGTACACCACAATCCCAAGGCCACTGGCTGCT
ATGGAATACAAACCTTGATTTTTATGCGCCCAGGGAAAAACCAGGTTATG
TTCTGCGTAATTTCAAAACCAAAAACTTTTTCCTATTATGGCTT
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAGCCACACTGCCCTTCTTCTCAACCTTGGCGGTCTGA
TGTTGTAACATAGAAACAGCAGACACAGTGCAGAGGAAAGCTTGCCAAGG
CATGAAGCCCTTCATCTCAGACTAGCAACAGCTACATTAGCTACGTGTCA
TCCACTCTTTCTTAGTCCACTGAGGACTAAGGCCCGTTTAGAAGCTGAAA
ATGCCAGGACCCTGCACTGTGGGTGAACCTCATAGGCAAGTTTCATGATT
TTGAAAAACAGTTTTACTCAAAATGACAAAAGGCAAGTTTCATAGAGGAT
GTAACACCCAAGTAACGACAGAAAGTTTTGCCTTTGTGGTATCACAAGCG
TTGCGATCTTTCTGACACCTATATGGAAATGTGTTACTGCCAATATTTTT
ACTTTCCTATAACTGAGCTTTGAATAGGTCTAGAGTTTCTGGAAGTCAAT
AGATCAAACTGATTTATTAACCAAGGTGAGATTTAAATGATGGGAGTTGG
AGGAGCTCTTTGCTCATTTGTAGTCATATCCTGGTTTAGTTGGTTGGGCA
CATGGTGTAAACATGTTTGCAGATGAACAAAAGCAGAGAANATTCCAGAT
AAGGAGAGAATGTCCAGAAGGAGCCAATAAAAAATAAATCTATGGGGCCT
TTTTTTTTTTAACTGTCAAGACNATTTCTTTTGGAAAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_a06.g1 MSMg01no423_a06.g1 CHROMAT_FILE:
MSMg01no423_a06.g1 PHD_FILE: MSMg01no423_a06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:36 2005
         (579 letters)



>mm_chr18_79497140_79498118
          Length = 979

 Score = 1056 bits (546), Expect = 0.0
 Identities = 570/578 (98%), Gaps = 2/578 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agccacactgcccttcttctcaaccttggcggtctgatgttgtaacatagaaacagcaga 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 agccacactgcccttcttctcaaccttgacggtctgatgttgtaacatagaaacagcaga 260

                                                                       
Query: 61  cacagtgcagaggaaagcttgccaaggcatgaagcccttcatctcagactagcaacagct 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 cacagtgcagaggaaagcttgccaaggcatgaaacccttcatctcagactagcaacagct 320

                                                                       
Query: 121 acattagctacgtgtcatccactctttcttagtccactgaggactaaggcccgtttagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acattagctacgtgtcatccactctttcttagtccactgaggactaaggcccgtttagaa 380

                                                                       
Query: 181 gctgaaaatgccaggaccctgcactgtgggtgaacctcataggcaagtttcatgattttg 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 gctgaaaatgccaggaccctgcactgtgggtgagcctcataggcaagtttcatgattttg 440

                                                                       
Query: 241 aaaaacagtttt-actcaaaatgacaaaaggcaagtttcatagaggatgtaacacccaag 299
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaaacagttttta-tcaaaatgacaaaaggcaagtttcatagaggatgtaacacccaag 499

                                                                       
Query: 300 taacgacagaaagttttgcctttgtggtatcacaagcgttgcgatctttctgacacctat 359
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 500 taacgacagaaagttttgcctttgtggtatcacaagcattgcgatctttctgacacctat 559

                                                                       
Query: 360 atggaaatgtgttactgccaatatttttactttcctataactgagctttgaataggtcta 419
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atggaaatgtgttagtgccaatatttttactttcctataactgagctttgaataggtcta 619

                                                                       
Query: 420 gagtttctggaagtcaatagatcaaactgatttattaaccaaggtgagatttaaatgatg 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gagtttctggaagtcaatagatcaaactgatttattaaccaaggtgagatttaaatgatg 679

                                                                       
Query: 480 ggagttggaggagctctttgctcatttgtagtcatatcctggtttagttggttgggcaca 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ggagttggaggagctctttgctcatttgtagtcatatcctggtttagttggttgggcaca 739

                                                 
Query: 540 tggtgtaaacatgtttgcagatgaacaaaagcagagaa 577
           |||||||||| |||||||||||||||||||||||||||
Sbjct: 740 tggtgtaaacgtgtttgcagatgaacaaaagcagagaa 777


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space:   551361
Effective search space used:   551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)