Query= MSMg01no426_d09.b1 MSMg01no426_d09.b1 CHROMAT_FILE:
MSMg01no426_d09.b1 PHD_FILE: MSMg01no426_d09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:40 2005
(431 letters)
>mm_chr18_60218217_60219047
Length = 831
Score = 580 bits (300), Expect = e-170
Identities = 321/330 (97%), Gaps = 4/330 (1%)
Strand = Plus / Minus
Query: 6 ggaattcgtgggttttccagttattttaaatagaactatatacatgaatctgtatttccc 65
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ggaattcgtgggttttaaagttattttaaatagaactatatacatgaatctgtatttccc 271
Query: 66 ttctctcctcctcaacctcctgtgtcctcctactctttttcaaattattgatattttaaa 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ttctctcctcctcaacctcctgtgtcctcctactctttttcaaattattgatattttaaa 211
Query: 126 aaatg----cacacacacacgtacacacacacacaatgttgagatcatttagttttgctt 181
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 aaatgcacacacacacacacgtacacacacacacaatgttgagatcatttagttttgctt 151
Query: 182 gtatgtggttaggactgtctatttggaattgaataacctttggggtctcattcctggaga 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 gtatgtggttaggactgtctatttggaattgaataacctttggggtctcattcctggaga 91
Query: 242 atactgattctacccctcccaatagccgttcattctctgtagttctaggaccttgtagga 301
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 90 atactgattctacccctcccagtagccgttcattctctggagttctaggaccttgtagga 31
Query: 302 tttccccaatgggtgttgtcattatgcaag 331
||||||||||||||| ||||||||||||||
Sbjct: 30 tttccccaatgggtgctgtcattatgcaag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space: 346884
Effective search space used: 346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no426_d09.g1 MSMg01no426_d09.g1 CHROMAT_FILE:
MSMg01no426_d09.g1 PHD_FILE: MSMg01no426_d09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:40 2005
(467 letters)
>mm_chr18_60049380_60050244
Length = 865
Score = 787 bits (407), Expect = 0.0
Identities = 455/479 (94%), Gaps = 14/479 (2%)
Strand = Plus / Plus
Query: 1 cttaatagtcagataataaagcaattataaaattggcaaggaaaatgaataaacatgtgt 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 cttaatagtcagttaataaagcaattataaaattggcaaggaaaatgaataaacacgtgt 260
Query: 61 taatagaagtcaaacaagatatatttgaaaaaaatgcccaacagtgctaatcataaagga 120
||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 261 taatagaagtcaaacaagatatattggaaaaa--tgcccaacagtgctaatcataaagga 318
Query: 121 gattaaagctgaaatagaagatggcacctgtggagatggctcagtcagtaaaatgtttgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 319 gattaaagctgaaatagaagatggcacctgtggagatggctcagtcagtaaaatgcttgc 378
Query: 181 tatgcaagcataaggaccagggtttgattgtcagcacccatgggaaaagttggttgtagc 240
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 379 tgtgcaagcataaggaccagggtttgattgtcagcacccatgggaaaagctggttgtagc 438
Query: 241 agctcacgctgtaatcctagcattagggaggcagaggcaagagaattcccagggcacaag 300
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 439 agctcatgctgtaatcctagcattagggaggcagaggcaagagaattctcagggcacaag 498
Query: 301 agcagagtatagccaaacaagaagatccaggttcagtaaaagaagtggaaagcaactgag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 agcagagtatagccaaacaagaagatccaggttcagtaaaagaagtggaaagcaactgag 558
Query: 361 gaacacaacagtacttcctgtctgccgtgtgcatctgcacacacatgtgcacacaca--- 417
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gaacacagtagtacttcctgtctgccgtgtgcatctgcacacacatgtgcacacacatgt 618
Query: 418 ---------aataagatagcactgcaagacaaagacagtggatttttagggaatgtatg 467
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gcacacacaaataagatagcactgcaagacaaagacagtggatttttagggaatgtatg 677
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 865
Length adjustment: 10
Effective length of query: 457
Effective length of database: 855
Effective search space: 390735
Effective search space used: 390735
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
