Query= MSMg01no426_j01.b1 MSMg01no426_j01.b1 CHROMAT_FILE:
MSMg01no426_j01.b1 PHD_FILE: MSMg01no426_j01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:09 2005
(428 letters)
>mm_chr18_86432907_86433734
Length = 828
Score = 783 bits (405), Expect = 0.0
Identities = 420/425 (98%)
Strand = Plus / Plus
Query: 4 ggaattccacatggaagtgagttatcttgtaagctaattgaaaacaaaatcttaagtgta 63
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 204 ggaattccacatggaagtgagttatcttgtaagctaatttaaaacaaaatcttaaatgta 263
Query: 64 cttctgagcattttaccctgcttttatctgtatactctttgactaatatgttgattagct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cttctgagcattttaccctgcttttatctgtatactctttgactaatatgttgattagct 323
Query: 124 atttgttttgatattaatgtgagccttggtgagtggcatgttgcatatgatgcttgtgta 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atttgttttgatattaatgtgagccttggtgagtggcatgttgcatatgatgcttgtgta 383
Query: 184 aggtaaatctaggtatagctgaagattctcttagacacaacattccaaagcacttgattg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aggtaaatctaggtatagctgaagattctcttagacacaacattccaaagcacttgattg 443
Query: 244 ctttgttcagcctgaacttggtaataacgctgacctacttgttcagcccaaaatggttca 303
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 444 ctttgttcagcctgaacttggtaataatgctgacctacttgttcagcccaaaatggttca 503
Query: 304 tgatgaccaagtttgtgtatcatgttcatagctctttctcttaagttttccattggataa 363
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 504 tgatgaccaagtttgtgtatcatgttcatagctccttctcttaagttttccattggataa 563
Query: 364 agccatgttcccaaagatatttccattctcaagatgatgcgcatagtgaccaaagtgtgc 423
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agtcatgttcccaaagatatttccattctcaagatgatgcgcatagtgaccaaagtgtgc 623
Query: 424 tctgc 428
|||||
Sbjct: 624 tctgc 628
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space: 343161
Effective search space used: 343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no426_j01.g1 MSMg01no426_j01.g1 CHROMAT_FILE:
MSMg01no426_j01.g1 PHD_FILE: MSMg01no426_j01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:09 2005
(505 letters)
>mm_chr18_86622813_86623717
Length = 905
Score = 911 bits (471), Expect = 0.0
Identities = 490/505 (97%), Gaps = 14/505 (2%)
Strand = Plus / Minus
Query: 1 aggaatgcaagtgagtatttgagagctggagatacacttctcttgctgtcccaataaatt 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 837 aggaatgcaagtgagtatttgagagctggagatacacttctcttgctgccccaataaatt 778
Query: 61 tcatatgtcatgagcaacttattggagactgcttttgagatgactatgaatgaacctgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 tcatatgtcatgagcaacttattggagactgcttttgagatgactatgaatgaacctgtc 718
Query: 121 acaggctattctcaaagtgaggttgggcatcttcatacacacacacacacacacacacac 180
|||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 717 acaggctattctcaaagtgaggttgggcatcttcat--------------acacacacac 672
Query: 181 acacacacacacacacacacacacacacacaattgactgtagtcaactgaagccttaagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 acacacacacacacacacacacacacacacaattgactgtagtcaactgaagccttaagc 612
Query: 241 agtgtcagggttttctctggaatcttaaagaaagccctccaacgttcttagagctatttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 agtgtcagggttttctctggaatcttaaagaaagccctccaacgttcttagagctatttt 552
Query: 301 cttaactatgttaacaggagatcttgttgtttagcttgtacaaatcacatatgccactct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 cttaactatgttaacaggagatcttgttgtttagcttgtacaaatcacatatgccactct 492
Query: 361 cccacagaactcaatgctgttcccagaaagaagcatttcaggagaaaattggactatctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 cccacagaactcaatgctgttcccagaaagaagcatttcaggagaaaattggactatctg 432
Query: 421 acacagttatatactacatctgtctcagttagtggtttactgctgtgaacatgcaccata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 acacagttatatactacatctgtctcagttagtggtttactgctgtgaacatgcaccata 372
Query: 481 actaaagcaacccttataaggacaa 505
|||||||||||||||||||||||||
Sbjct: 371 actaaagcaacccttataaggacaa 347
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 70
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space: 443025
Effective search space used: 443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
