Query= MSMg01no427_j04.b1 MSMg01no427_j04.b1 CHROMAT_FILE:
MSMg01no427_j04.b1 PHD_FILE: MSMg01no427_j04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:29 2005
(553 letters)
>mm_chr18_26183461_26184412
Length = 952
Score = 868 bits (449), Expect = 0.0
Identities = 526/563 (93%), Gaps = 21/563 (3%)
Strand = Plus / Plus
Query: 8 gaattcatacattgttccca---tatattgtgacttctttagaattaattttgtcgttca 64
|||||||||||||| || |||||||||||||||||||||||||||||||| ||||
Sbjct: 208 gaattcatacattgg---caggatatattgtgacttctttagaattaattttgtcattca 264
Query: 65 agtacataatactgacatttttcttgagagatgaggagcaataagtgtccattacattta 124
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 265 agtacataatactgacatttttcttgagagatgaggagcaaaaagtgtccattacattta 324
Query: 125 taacagtgcttggacttaacagttctgtagggacttggcttatgtacattctaggtgggc 184
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taacagtgcttggacttaaaagttctgtagggacttggcttatgtacattctaggtgggc 384
Query: 185 agtgtgtacatttttcttgtttattgatgaatcttttgggtgagttggcttgctggggac 244
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 385 agtgtgtacatttttcttgtttgttgatgaatcttttgggttagttggcttgctggggac 444
Query: 245 tatataatgggaaagatttcagcaaaaactgggtaaaatggctactccagcagaagctta 304
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tatataatgggaaagttttcagcaaaaactgggtaaaatggctactccagcagaagctta 504
Query: 305 atttttgataactagaactagtcataggtacttcacctaccttcaaaggatactagtacc 364
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 505 atttttgataactagaactagtcataggtacttcatctaccttcaaaggatactagtacc 564
Query: 365 acttgtaactgaaagaattatagaagggagaactttagggtgatgggtattttttattca 424
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 565 acttgtaactgaaagaattatagaagggagaactttagggtgatggatattttttattaa 624
Query: 425 ttgggtaaatatgcagtctcggtcatttcactgcaaaaagaaa--------------gag 470
|||| ||||||||||||||| |||||||||||||||||| ||| |||
Sbjct: 625 ttgg-taaatatgcagtctcagtcatttcactgcaaaaaaaaaaaaaaaaaaaaagagag 683
Query: 471 aaccaaggatttatgtttgacactgtggatcagagaaaatcttccctgttaatgaaatag 530
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 684 aaccaaggattcatgtttgacactgtggatcagcgaaaatcttccctgttaatgaaatag 743
Query: 531 ctcctaaatatgcactctcagaa 553
|||||||||| ||||| ||||||
Sbjct: 744 ctcctaaatacgcactttcagaa 766
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 952
Length adjustment: 10
Effective length of query: 543
Effective length of database: 942
Effective search space: 511506
Effective search space used: 511506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no427_j04.g1 MSMg01no427_j04.g1 CHROMAT_FILE:
MSMg01no427_j04.g1 PHD_FILE: MSMg01no427_j04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:29 2005
(564 letters)
>mm_chr18_26335263_26336231
Length = 969
Score = 1046 bits (541), Expect = 0.0
Identities = 560/569 (98%), Gaps = 5/569 (0%)
Strand = Plus / Minus
Query: 1 acaggttctgagattccaaagttgtctcaagctgaaataaagagaagcagctggggcg-- 58
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 acaggttctgagattccaaagttgtctcaagctgaaataaagagaagcagctggggcggg 710
Query: 59 ---gggggggggggggacaagcaggaaaatggctgcccatcagccacagggagtagagat 115
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 709 ggcgggggggggggggacaagcaggaaaatggctgcccatcagccacagtgagtagagat 650
Query: 116 cattgggaagacatctagaaaaaataataataataaagcaagtccaggtcagaccttcca 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 cattgggaagacatctagaaaaaataataataataaagcaagtccaggtcagaccttcca 590
Query: 176 gactctcaagaaagcaagccctggctgaaactgtgctgctgaacgagatgcacctgctct 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 gactctcaagaaagcaagccctggctgaaactgtgctgctgaacgagatgcacctgctct 530
Query: 236 gtttatgatccagctccatctggctgtcatctcagggcacagctgctcacgtaatcccca 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gtttatgatccagctccatctggctgtcatctcagggcacagctgctcacgtaatcccca 470
Query: 296 aggcccaccccagacaaggaggagtaagtagcagccagccaaggggccatgaaggtggca 355
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 469 aggcccaccccagacaaggaggagtaagtagcagccagccaaggtgccatgaaggtggca 410
Query: 356 ccccacacacatatacacacacacaagcctttctacatccaggttgctaggctaatctgc 415
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 409 ccccacacacatatacacacacacaagcctttctacatccaggttgctagtctaatctgc 350
Query: 416 tgccagtttcatccccttcttactctgaaggtgccaaagaaccaaaaggctaggatgaat 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 tgccagtttcatccccttcttactctgaaggtgccaaagaaccaaaaggctaggatgaat 290
Query: 476 ttgtcaatatttttcatagtacagccaaggatgatcaattctcttcattggaaaatgctt 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ttgtcaatatttttcatagtacagccaaggatgatcaattctcttcattggaaaatgctt 230
Query: 536 tgaaacacataaaacgatgactgggtatg 564
|||||||||||| ||||||||||||||||
Sbjct: 229 tgaaacacataagacgatgactgggtatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 969
Length adjustment: 10
Effective length of query: 554
Effective length of database: 959
Effective search space: 531286
Effective search space used: 531286
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
