BAC Information

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BAC

Clone NameMSMg01-428O12
Chromosome18 (Build37)
Map Location 87,223,845 - 87,224,083
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545270, LOC665402, Neto1, Cbln2, LOC100039872, LOC100039881, LOC665437, LOC435580, LOC546719
Downstream geneLOC383318, Ppia-ps18_1039.1, LOC329008
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428O12.T7 (MSMg01no428_o12.b1)MSMg01-428O12.TJ (MSMg01no428_o12.g1)
ACCAG521762AG521763
length751772
length of high quality
(start - end)
243 (75 - 317)239 (79 - 317)
definitionCHROMAT_FILE: MSMg01no428_o12.b1 PHD_FILE: MSMg01no428_o12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:13 2005CHROMAT_FILE: MSMg01no428_o12.g1 PHD_FILE: MSMg01no428_o12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATCACGGATCCGC
GGAATTCTTTTTTTACATCAGAACCCAATTTTTAATAAGATTATGTGATT
CTCTGGAGTCTAACTTCTTGAGTCCTTTGTATATATTGGATATTAGCTCT
CTATCAGATGTAGAATTAATAAAGATCTTTCCCCAATTGTTTGGTTGCCA
TTTTGTCCTATAGAAAGTGCTCTTTTGTGAGACATATTGTGTGTGTGTGT
GTGTGTGTGTGTGTGCGTGTGTGTGTATAAAAGAAATAGTATCTTAACAT
TAATTTGAATTCAATTCNTTCCTTTGAAGNACAATAACTTCAAACTTAAA
ATGAGCTCTACTTAAATTGGTTATTAAGGGCAAGACCCACTCTGTATGTT
GCAATTTAGAGTTGAGTTTCAATTCATAGGTAGAACCAGACTTAATAACT
ATGGTAATGAAGTCATTATATTTGTATCTACCATGTCCATCTGTGTTGCA
TTTCCAAACATTGCTTCTTGACTTGGTCCTATTGGGAATTTTAAGAGTAC
GGCCACTGTATAAAAATTAAATCATAGATAACATTCGACTAAATCGGATT
AACCAACCTGTATTTTAAGATATTTTCTCTTCCTTCCCTCTTTCTCTCCT
TTTTTTTCTTTTTCTTTCCTTTCCCTTCCATTCCCTTTCCCTTTCCTTTC
CTTTTCTTTCTTCCTCACTTCTCTTACCCCAACATTTATTATTTTCCACC
A
NTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAATGAATCATTTGGACAATGT
GAGTCCAGAAGAGACACTTAGCATCATGTCCATACCCCAGTGCCTAATTT
ATTTGAAAATTTTATTTTTACTTTTAATTATGTGTATATATTGGTTGTTA
GTGAGTTTGTACATGTGCTTAAAGATGTGCACAGAGGCCAGAGTGTCTAG
CATATCTTTCCCAAGTGAAGTGATCTATCTGAAGTAGCTGCCTGGGGGAA
AGTTGGGACCTCTACAATAGCTAGTTCTTTTAAACATTGCACTACTGTGG
CCCTTCGAACCTCCCAGTTATTATTTTTAGTTCTAGAATGTCTGCATAGA
TTGCTGTTCTCTCTCTCTCCCTCCCTCCCTCTCCCTCCCCCTCCTCCCTC
CCCTCCCCTCCCCTCCCTTTTCCTTTTTTCTACTCCCCTTTTTCTCCTCT
TCCTCTCCCTTCCTTTTCTTTTTTCTCTTCTACTCTCTTCCCTTCACTCT
TCTCCCCTTTCTTCCCCTCCCTTTTTTACTTTTTTTCCCCCTTCTTTCAC
GCCCCCTTTTTCTCCTTTTTTCTTTCCCTCCCCATTATTTTTCCTCTCTC
CCTCCCTTTTTTTTTTTTTTTTCCTTTCTCCCCTCCTTTATCTTATCTTA
TCTTAACCCCCTCTTTTCCTTTTTTCTCTTTTCTCTCCCCCTTTTTCTTT
TATTCCCTCTTCCTCTTTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_o12.g1 MSMg01no428_o12.g1 CHROMAT_FILE:
MSMg01no428_o12.g1 PHD_FILE: MSMg01no428_o12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:13 2005
         (239 letters)



>mm_chr18_87223645_87224283
          Length = 639

 Score =  455 bits (235), Expect = e-132
 Identities = 238/239 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatgaatcatttggacaatgtgagtccagaagagacacttagcatcatgtccatacccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caatgaatcatttggacaatgtgagtccagaagagacacttagcatcatgtccatacccc 260

                                                                       
Query: 61  agtgcctaatttatttgaaaattttatttttacttttaattatgtgtatatattggttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtgcctaatttatttgaaaattttatttttacttttaattatgtgtatatattggttgt 320

                                                                       
Query: 121 tagtgagtttgtacatgtgcttaaagatgtgcacagaggccagagtgtctagcatatctt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 tagtgagtttgtacatgtgcttaaagatgtgcacagaggccagagtgtctagcagatctt 380

                                                                      
Query: 181 tcccaagtgaagtgatctatctgaagtagctgcctgggggaaagttgggacctctacaa 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcccaagtgaagtgatctatctgaagtagctgcctgggggaaagttgggacctctacaa 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)