Query= MSMg01no431_b12.b1 MSMg01no431_b12.b1 CHROMAT_FILE:
MSMg01no431_b12.b1 PHD_FILE: MSMg01no431_b12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:15 2005
(531 letters)
>mm_chr18_62842057_62842987
Length = 931
Score = 948 bits (490), Expect = 0.0
Identities = 517/526 (98%), Gaps = 1/526 (0%)
Strand = Plus / Minus
Query: 6 gaattcctaaaatgtgccaattaaatgtatgctgaaacatgaccagatcaccactgactg 65
|||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 536 gaattcctaaaatgagctaattaaatgtatgctgaaacgtgaccagatcaccactgactg 477
Query: 66 tgttgtttgaggagataaatgttttctaatcctggagattatagggaaaaaatgttcttc 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tgttgtttgaggagataaatgttttctaatcctggagattatagggaaaaaatgttcttc 417
Query: 126 cagccttggcaaaagaatgatagatttcagtcagagaatggagaattcctatcatcccat 185
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 416 cagccttggcaaaagaatgatagattttagtcagagaatggagaattcctatcatcccat 357
Query: 186 attatgttatttcaagtataagatgttttcaaacttagtttgagtctaatgtagaaaact 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 attatgttatttcaagtataagatgttttcaaacttagtttgagtctaatgtagaaaact 297
Query: 246 tggtgttatatgtactaattataaattaatcatactcattcttttgggagtggaaagcaa 305
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 296 tggtgttatatgtactaattataaattaatcatacccattcttttgggagtggaaagcaa 237
Query: 306 ttatgctgttattaaaaatgcatctatatctgctgaacgtggtgccacacacttttaact 365
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 236 ttatgctgttattaaaaatgcatctatatctgctgaacatggtgccacacacttttaact 177
Query: 366 ccagcctcaggaggcgaggcaggtggatctctgtgagttcaaggccagcagagtctacat 425
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 ccagcctcaggaggagaggcaggtggatctctgtgagttcaaggccagcagagtctacat 117
Query: 426 agaaagacctagtctcaaaataaacaaacaagaaaagcaaaatgctaacgagtcaggtga 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 agaaagacctagtctcaaaataaacaaacaagaaaagcaaaatgctaacgagtcaggtga 57
Query: 486 tagaacataaatttttttttttattaaaggaaggtttttgaagaaa 531
||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 56 tagaacataaaattttttttt-attaaaggaaggtttttgaagaaa 12
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space: 479841
Effective search space used: 479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no431_b12.g1 MSMg01no431_b12.g1 CHROMAT_FILE:
MSMg01no431_b12.g1 PHD_FILE: MSMg01no431_b12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:15 2005
(450 letters)
>mm_chr18_62681357_62682205
Length = 849
Score = 793 bits (410), Expect = 0.0
Identities = 440/452 (97%), Gaps = 5/452 (1%)
Strand = Plus / Plus
Query: 1 actgtatatgggataaggggaggcaggagaactgagacggaataggacttctggtcaata 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgtatacgggataaggggaggcaggagaactgagacggaataggacttctggtcaata 260
Query: 61 aaacctttcacttcaggttagtttcagaagtcacgtaaggaagagtttagaaatctgcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaacctttcacttcaggttagtttcagaagtcacgtaaggaagagtttagaaatctgcct 320
Query: 121 gtagtttgtctttccagacaatgtgccatcttctcaaggaaacaatagactaggatctgg 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 gtagtttgtctttccagacaatgtgccatcttctcaaggaaacaatagtctaggatctgg 380
Query: 181 gctgtgactcagtcttctgtggaaagacgtgcatgtgaaaccagggcaccgaatctataa 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 gctgtgactcagtcttctgtggaaagatgtgcatgtgaaaccagggcaccgaatctataa 440
Query: 241 ctggggcagtgctaacatttatgctaagagctttaaaactgaaggatttttccaggtcag 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 ctggggcagtgcaaacatttatgctaagagctttaaaactgaaggatttttccagctcag 500
Query: 301 tggataatggttctcagaacttttacaaacattcctcataagataatatgtacacaaaat 360
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 tgaataatggttctcagaacttttacaaacattcctcataagataatatgtacataaaat 560
Query: 361 atctatattaggaatataatcatgtcacattaaagaaaacacattatttcactgccaaaa 420
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 561 atctatattaggaatataat---gtcacattaaagaaaacacattatttcactgccaaaa 617
Query: 421 aacag--cagtattttcaagtttacagtacct 450
||||| |||||||||||||||||||||||||
Sbjct: 618 aacagagcagtattttcaagtttacagtacct 649
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 849
Length adjustment: 10
Effective length of query: 440
Effective length of database: 839
Effective search space: 369160
Effective search space used: 369160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
