Query= MSMg01no432_o14.b1 MSMg01no432_o14.b1 CHROMAT_FILE:
MSMg01no432_o14.b1 PHD_FILE: MSMg01no432_o14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:49 2005
(413 letters)
>mm_chr18_34675035_34675847
Length = 813
Score = 760 bits (393), Expect = 0.0
Identities = 399/401 (99%)
Strand = Plus / Minus
Query: 1 caaaaaatgtggacttggcaaaaacgagcactactgtcaattgtcccagctcctcaaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 caaaaaatgtggacttggcaaaaacgagcactactgtcaattgtcccagctcctcaaact 542
Query: 61 cgatgtggctggcactagggtctctgggagtgaatatagcaacggaaatctgcattgtgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cgatgtggctggcactagggtctctgggagtgaatatagcaacggaaatctgcattgtgt 482
Query: 121 tgactttggtcctcttccaaagccattctatttcagagggatgtatgatgaagcctttcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tgactttggtcctcttccaaagccattctatttcagagggatgtatgatgaagcctttcc 422
Query: 181 agggcagagatcattaattctcccgcacatcataatagttgctcaggaagtatgtattta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 agggcagagatcattaattctcccgcacatcataatagttgctcaggaagtatgtattta 362
Query: 241 agaaaataaatgacacttacattactttgggttgctaagggcagaacagtatctgccatt 300
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agaaaataaatgacacaaacattactttgggttgctaagggcagaacagtatctgccatt 302
Query: 301 attttggatgctggcgtgggatttgtactctctggaacagtctcttctctttgtagctag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 attttggatgctggcgtgggatttgtactctctggaacagtctcttctctttgtagctag 242
Query: 361 gaattttttgttgttgttcatgaagaacatacattcttgca 401
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaattttttgttgttgttcatgaagaacatacattcttgca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space: 324816
Effective search space used: 324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no432_o14.g1 MSMg01no432_o14.g1 CHROMAT_FILE:
MSMg01no432_o14.g1 PHD_FILE: MSMg01no432_o14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:49 2005
(463 letters)
>mm_chr18_34522398_34523260
Length = 863
Score = 288 bits (149), Expect = 5e-82
Identities = 158/161 (98%)
Strand = Plus / Plus
Query: 1 acagccagtctagactacatagtgacacccaaaataaaggcaaaagctcttcctaattct 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagccagtctagactacatagtgacacccaaaataaaggcaaaagctcttcctaattca 260
Query: 61 cctgtatgcatgcttgtgggagagggatctaccacagaaagtcagcgttatggaaaacaa 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 cctgtatgcatgcttgtgggagaggggtctaccacagaaagtcagcgttatggaaaacaa 320
Query: 121 acctcaatggagataaaaccaagtttaaaaaaatggattta 161
|||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 acctcaatggagataaaaccaagtttaaaaaagtggattta 361
Score = 238 bits (123), Expect = 6e-67
Identities = 135/139 (97%), Gaps = 2/139 (1%)
Strand = Plus / Plus
Query: 326 aaaaaa-tggatttaagttcttttttttgctgtgccccctagatggtaggccacatcaag 384
|||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 347 aaaaaagtggatttaagttc-tttttttgctgtgcctcctagatggtaggccacatcaag 405
Query: 385 atgaaactcagtctccttcctactggctgccagaaactcacagatgcggatgaggatggc 444
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 atgaaacccagtctccttcctactggctgccagaaactcacagatgcggatgaggatggc 465
Query: 445 aaaccatacggcctgcgag 463
|||||||||||||||||||
Sbjct: 466 aaaccatacggcctgcgag 484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space: 386409
Effective search space used: 386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
