BAC Information

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BAC

Clone NameMSMg01-433C08
Chromosome18 (Build37)
Map Location 57,081,345 - 57,081,512
singlet/doubletsinglet
Overlap geneMarch3
Upstream geneLOC100043099, LOC629057, LOC100043104, LOC676543, LOC667432, Gramd3, LOC667458, Aldh7a1, Rnuxa, 1700065I17Rik, LOC675171, Lmnb1
Downstream geneC330018D20Rik, Megf10, LOC672445, Prrc1, 1700011I03Rik, 4930511M06Rik, 2210409D07Rik, Slc12a2, 9330166H04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433C08.T7 (MSMg01no433_c08.b1)MSMg01-433C08.TJ (MSMg01no433_c08.g1)
ACCAG524996AG524997
length755763
length of high quality
(start - end)
246 (73 - 318)168 (66 - 233)
definitionCHROMAT_FILE: MSMg01no433_c08.b1 PHD_FILE: MSMg01no433_c08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:09 2005CHROMAT_FILE: MSMg01no433_c08.g1 PHD_FILE: MSMg01no433_c08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CACXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCGATTCCGCGGAANT
CTCACCTGATTACACAAAATGGCTGAGAAGCACCTGAAAAAATGTTCAAC
ATCCTTAATCATCATGGAAATGCAAATCAAAACAACCCTAAGATTCCACC
TCACACCAGTCAGAATGTCTAAGATCAAAAATTCAGGTGACAGCAGATGC
TGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTG
CTTGCTTGTACAACCACTCTGGAAATCCGTCTGGCGGTTCCTCAGAAAAT
TGGACATAGTACTACCGTTTTTTATTGCAATACCTCTCCTGGGCATATAT
CCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCAT
AGCAGCATTATTTATAATAGCCAGAATCTGGATAGAACCCAGATGCCCCT
CTTTAGAGGACTGGATACCGATTATGTGGTACATCTATTTTACGGAGCAC
TACTCATTTATTATTAAGAATGAATTTATGATTCTCCCAGCCCAATTGGA
CGTACCTGCAGGTTTTCCTCCCCGACTGATGTTTCCCCATTCCCTTTGGA
TACCCCCTTTTTATTTTTTCCCCCGATTATTTGTATTTTTCACCCCTAAT
TTCCCCGCACCTCTTTTTACTTTCCTATCTTATTCCTCTCCTCCCTCCTT
CTTTTCCTTCCTCACACCTTTCACTATCGCGTTTGTTTTTCCTCTTTCTT
TCCNT
TGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCCTCATGTAGGCTTTGTCCCCAATTGTGCTCCGTG
ACCTTTCGTAAACTATTTGCCTCTCTATGTCAAGGTTGGCTGATTAAGCT
CAGGGCCACCCAAATATTCATCACACACGCTGGCTAACTTCATAAGGAAA
ACTTAGAAAGTCAAGTCCAATAGAAAGAGAAATGCACAGGAATATGGCTT
CAGAAGATGTGTTCTCACAAAGTAAACACAGGTAGGCAGCTCACAGCGTA
AGACCAACATCTTTCTTACTGGTATTGTCTTGAATCATGACAGACAGAAT
CCTCGCCTCATGCTTTTGTGGCCGTTCTTTGCTCATCCGCAACTAACTGG
TGCGTGCCGACATCCCTGTCCCCCCTTCTCCTCTCCATCGTCCTACCCTA
CTCCTCCTCCCCTCCCACACCTTTACTTCTTTTCCCCCCCTTTCTCCTCC
TTCCTCCTCCTTTTCCCTTCTCATCTATTTCTTTTACCCCTCTTTCCATC
CTTCACCTTCCCCTTCCTCTTACTCCCCGTTACTCCTCCTTCCTTCCCCT
TCTTTCTCTTTCAATTCCCTCTTTCTTTCTTTTCCTTTTTTCCCCCCCCC
CCTTTTCTATCCTTTTCACCCCACCTCCCTATTTCCCTTCCCCTTTTCCC
TTCCTTTCCCCCTTTTTCCCTTTCCTTTCCCATTCCCCTCTTTTTCCCCA
TTTCTCTTCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_c08.g1 MSMg01no433_c08.g1 CHROMAT_FILE:
MSMg01no433_c08.g1 PHD_FILE: MSMg01no433_c08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:09 2005
         (168 letters)



>mm_chr18_57081145_57081712
          Length = 568

 Score =  294 bits (152), Expect = 2e-84
 Identities = 164/168 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctcatgtaggctttgtccccaattgtgctccgtgacctttcgtaaactatttgcctctc 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 cctcatgtaggctttgtccccaattgtgctccgtgacctttcgcaaactatttgcctctc 260

                                                                       
Query: 61  tatgtcaaggttggctgattaagctcagggccacccaaatattcatcacacacgctggct 120
           |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
Sbjct: 261 tatgtcaaggttggctgattaagctcggggtcacccaaatattcatcacacacgctggtt 320

                                                           
Query: 121 aacttcataaggaaaacttagaaagtcaagtccaatagaaagagaaat 168
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacttcataaggaaaacttagaaagtcaagtccaatagaaagagaaat 368


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 568
Length adjustment: 8
Effective length of query: 160
Effective length of database: 560
Effective search space:    89600
Effective search space used:    89600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)