Query= MSMg01no436_l11.b1 MSMg01no436_l11.b1 CHROMAT_FILE:
MSMg01no436_l11.b1 PHD_FILE: MSMg01no436_l11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:52 2005
(650 letters)
>mm_chr18_89707981_89709031
Length = 1051
Score = 1220 bits (631), Expect = 0.0
Identities = 646/655 (98%), Gaps = 9/655 (1%)
Strand = Plus / Minus
Query: 1 cagtaattaacttgtggttt-aaataatccctagcctcatctaacctcttccaaaacact 59
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 851 cagtaattaacttgtggtttaaaataatccctagcctcatctaacctcttccaaaacact 792
Query: 60 gaaacgtctaaggacattttgtcttcaccatcctcatcccaaccacttatgtcagccact 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 gaaacgtctaaggacattttgtcttcaccatcctcatcccaaccacttatgtcagccact 732
Query: 120 gttccctgaatattgtacagacccatggaatatttacatttgcctcctatatgatgaaac 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 gttccctgaatattgtacagacccatggaatatttacatttgcctcctatatgatgaaac 672
Query: 180 tacaaattgtatcatatgtcttttataaagcttgctatcaacaagattataattcaagtc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 tacaaattgtatcatatgtcttttataaagcttgctatcaacaagattataattcaagtc 612
Query: 240 tt----attttctcaaaatctaaaatcagtggataatatattaacttttgtctgtagtta 295
|| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ttaagca----ctcaaaatctaaaatcagtggataatatattaacttttgtctgtagtta 556
Query: 296 cggaaaatttaaatgtgataatagaccttttgctgaaatgtgttttgtgttgcttatcaa 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 cggaaaatttaaatgtgataatagaccttttgctgaaatgtgttttgtgttgcttatcaa 496
Query: 356 ttaaaatgtatctctaaccattttccatatcactacatatttagatcttattcaattacc 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ttaaaatgtatctctaaccattttccatatcactacatatttagatcttattcaattacc 436
Query: 416 aaatttaaaatgagtcataaatatttcatgaaatttttatcttctttttaatctctgggg 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aaatttaaaatgagtcataaatatttcatgaaatttttatcttctttttaatctctgggg 376
Query: 476 tcaatttttaaaattaattaactgattttatagtgtgcttttctttaatgataaattgta 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tcaatttttaaaattaattaactgattttatagtgtgcttttctttaatgataaattgta 316
Query: 536 attaaatatttgatgtataatgaatcctggcttaaattgctttgccatgcatacaagcta 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 attaaatatttgatgtataatgaatcctggcttaaattgctttgccatgcatacaagcta 256
Query: 596 attccttctcgacttgcatctataaaatagtgttttcacatcattttatttaaag 650
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 attccttctcgacttgcatctataaaatagtgttttcacatcattttatttaaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1051
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1041
Effective search space: 666240
Effective search space used: 666240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no436_l11.g1 MSMg01no436_l11.g1 CHROMAT_FILE:
MSMg01no436_l11.g1 PHD_FILE: MSMg01no436_l11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:52 2005
(549 letters)
>mm_chr18_89533475_89534423
Length = 949
Score = 930 bits (481), Expect = 0.0
Identities = 526/549 (95%), Gaps = 15/549 (2%)
Strand = Plus / Plus
Query: 1 aatcacttgagtgatggagaagaaggtatgggaatctatattactgatgatattcacaca 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 aatcacttgagtgatggagaagaaggcatgggaatctatattactgatgatattcacaca 260
Query: 61 tgcagtgggtcacctgacagttccaatgacctgatgagtgttcaccctgcttcatgagga 120
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 261 tgcagtgggtcacctgacagttccaatgacccgatgagttttcaccctgcttcatgagga 320
Query: 121 aagaatgcaattggtttaatctagaggagacgcagtttataagctcgttaattctcagaa 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 aagaatgcaattggtttaatctagaggagactcagtttataagctcgttaattctcagaa 380
Query: 181 gtagggcagacagaagtgctaaacaaaatgtagatatcacatatgatgattccagtcaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtagggcagacagaagtgctaaacaaaatgtagatatcacatatgatgattccagtcaat 440
Query: 241 atactctcccacacaaaacatgttctccttcttggaccacataatgttgtagcattggag 300
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 441 atactctcccacacaaaacatattttccttcttggaccacataatgttgtagcattggag 500
Query: 301 aacttgaaaataccccagatatgcctggagacttaatagcttcatcagaaatagtcagtc 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 501 aacttgaaaataccccagatatgcctggagacctaatagcttcatcagaaatagtcagtc 560
Query: 361 tgatggtgccaaagatctcatttagtaaataaactaaatcaagtgtgtcaatagaagtga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgatggtgccaaagatctcatttagtaaataaactaaatcaagtgtgtcaatagaagtga 620
Query: 421 gtcatgactgggctgaattaacataaatggttgtaggcacaacatggagaactcagatta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtcatgactgggctgaattaacataaatggttgtaggcacaacatggagaactcagatta 680
Query: 481 ttatttattattattattattattattattatttgcattatcaagtatgttttcaaagtt 540
|||||||||||||||||| | | |||| ||||||||||||||||||||
Sbjct: 681 ttatttattattattatt-tga--------attt------tcaagtatgttttcaaagtt 725
Query: 541 atctgctct 549
|||||||||
Sbjct: 726 atctgctct 734
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space: 506121
Effective search space used: 506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
