Query= MSMg01no436_o05.b1 MSMg01no436_o05.b1 CHROMAT_FILE:
MSMg01no436_o05.b1 PHD_FILE: MSMg01no436_o05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:05 2005
(483 letters)
>mm_chr18_43745734_43746616
Length = 883
Score = 849 bits (439), Expect = 0.0
Identities = 468/483 (96%), Gaps = 10/483 (2%)
Strand = Plus / Plus
Query: 1 cacatttgtttcagaatccatggaaaaggcagtcatttgcaggatctcacaatgtgactt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacatttgtttcagaatccatggaaaaggcagtcatttgcaggatctcacaatgtgactt 260
Query: 61 gtttttccttaaacttatatgggaaagtgcttcactttgagggagagctaaaacatgcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttttccttaaacttatatgggaaagtgcttcactttgagggagagctaaaacatgcag 320
Query: 121 tttgagagactcaagagaccataacaaagtgattctcaaatgtcctacgctatggccctt 180
|||| |||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 321 tttgggagactcaagagaccataacaaagtgattctcaaatgtccta-g---------tt 370
Query: 181 taatatagttccttgtgtcatggtgacacacaaccataaaattatttttgttgctacttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 taatatagttccttgtgtcatggtgacacacaaccataaaattatttttgttgctacttc 430
Query: 241 aaaactgtaatttttctacagttttcaaatcataatgaaaacatctgatatctctgatag 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 431 aaaactgtaatttttctacagttttcaaatcataatgaaaacatctgatatctctgatgg 490
Query: 301 ttgtaggcaacccttatgaacaggtcctactagctccaaacattctcaacgtacaggttg 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 491 ttgtaggcaacccttatgaacaggtcctactagctccaaacgttctcaacgtacaggttg 550
Query: 361 agaaccactgcagttgtgtgatgaagtctttttccaagcttacatataatttaggcatta 420
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 551 agaaccactgcagttgtgtgatgaagtctttttccaagcttacatatcatttaggcatta 610
Query: 421 aggcagaagatttaaatatcctaacataaatcatgagaagaggacacaaaaaagctattg 480
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 aggtagaagatttaaatatcctaacataaatcatgagaagaggacacaaaaaagctattg 670
Query: 481 ctg 483
|||
Sbjct: 671 ctg 673
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space: 412929
Effective search space used: 412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no436_o05.g1 MSMg01no436_o05.g1 CHROMAT_FILE:
MSMg01no436_o05.g1 PHD_FILE: MSMg01no436_o05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:05 2005
(576 letters)
>mm_chr18_43887675_43888650
Length = 976
Score = 1083 bits (560), Expect = 0.0
Identities = 572/576 (99%)
Strand = Plus / Minus
Query: 1 tagaagcagtctgataactaagaacaattttagaattgaaagacatttaggttttttgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 tagaagcagtctgataactaagaacaattttagaattgaaagacatttaggttttttgag 717
Query: 61 agaaactgacttggccaaggtaacatgggaacagcagagaaaattttatctagagaagat 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 agaaactgacttggccaaggtaacatgggaacagcagagaaaattttatctagagaagac 657
Query: 121 cttggtactggctgttgttatgggaatcaagattgcctgacagaatcaagccccatcttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 cttggtactggctgttgttatgggaatcaagattgcctgacagaatcaagccccatcttt 597
Query: 181 taagctgaaatgttaaacagctagaaagctctgccctaacctggacaatagctaagatgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 taagctgaaatgttaaacagctagaaagctctgccctaacctggacaatagctaagatgg 537
Query: 241 ccacctagtcactaagtgcacagcatcagtagtaaaagaagcagaggtggatttgagatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ccacctagtcactaagtgcacagcatcagtagtaaaagaagcagaggtggatttgagatt 477
Query: 301 cgtttcaagggttcccagtaacatttcattaggcctgtaaagaacaatgacctacagttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 cgtttcaagggttcccagtaacatttcattaggcctgtaaagaacaatgacctacagttt 417
Query: 361 ttctactctcttgtatcccgtgtggacatgataaaaagcagcaattactcaatgaataca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ttctactctcttgtatcccgtgtggacatgataaaaagcagcaattactcaatgaataca 357
Query: 421 caaataaataaatggattagaaagagggaaaaccgaataaatcataagcctgtcttttaa 480
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 caaatgaataaatggattagaaagagggaaaaccgaataaatcataagcctgtcttttaa 297
Query: 481 agaaaggtagaattatttttaagtttcatttctattctcccatagtcacttatttgtgcc 540
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 agaaaggtagaattattttaaagtttcatttctattctcccatagtcacttatttgtgcc 237
Query: 541 agtaaaattcaagctgacccttaatttattttcctt 576
||| ||||||||||||||||||||||||||||||||
Sbjct: 236 agttaaattcaagctgacccttaatttattttcctt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space: 546756
Effective search space used: 546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
