Query= MSMg01no438_k04.b1 MSMg01no438_k04.b1 CHROMAT_FILE:
MSMg01no438_k04.b1 PHD_FILE: MSMg01no438_k04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:29 2005
(511 letters)
>mm_chr18_34067402_34068312
Length = 911
Score = 861 bits (445), Expect = 0.0
Identities = 490/511 (95%), Gaps = 10/511 (1%)
Strand = Plus / Plus
Query: 1 ccattattacagctccattcagacactcctcagagtctcaggccttaaatgtcaaaaacc 60
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 211 ccattattacagctccattcagacactcctcggagtctcaggccttaaacatcaaaaacc 270
Query: 61 tcttctacccatctgtaaatcctcttggtttctgtgttccaaagagaaaccaaatccaaa 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 271 tcttctacccatctgtaaatcctgttggtttctgtgttccaaagagaaaccaaatccaaa 330
Query: 121 catttctccacactctcgggtaagcaatgtcaccctctcctggattccttaaatggctcc 180
|||||||||||||| || |||||||||||||||||||||||||| ||||||
Sbjct: 331 catttctccacact----------cactgtcaccctctcctggattccttaaacggctcc 380
Query: 181 ttctttgctgccctgccaccccatcaagccctgcctctgtagttaggaagagaagccatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctttgctgccctgccaccccatcaagccctgcctctgtagttaggaagagaagccatt 440
Query: 241 caaagcatgagtcaaatcagttccctcttcagggaggcagcctgcagcagtttcccttct 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaagcatgagtcagatcagttccctcttcagggaggcagcctgcagcagtttcccttct 500
Query: 301 gacagacatcaagccagcatcctgtggtaatcagccatgcccttccagagcaggacctac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gacagacatcaagccagcatcctgtggtaatcagccatgcccttccagagcaggacctac 560
Query: 361 tccagtccctcctctctgaggttagaaggaggaggagcaggaaacaccttatacaacaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccagtccctcctctctgaggttagaaggaggaggagcaggaaacaccttatacaacaag 620
Query: 421 agcatcggcagaagcctgaggtcttggaggctgtcaccaggagaagtaggaaaaaaggag 480
|||||| || ||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 621 agcatcagcggaagcctgaggtcttggaggctgtcaccaagagaagtaggaagaaaggag 680
Query: 481 cctaattatacagagtcagagcttagcaatg 511
|||||||||||||||||||||||||||||||
Sbjct: 681 cctaattatacagagtcagagcttagcaatg 711
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space: 451401
Effective search space used: 451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no438_k04.g1 MSMg01no438_k04.g1 CHROMAT_FILE:
MSMg01no438_k04.g1 PHD_FILE: MSMg01no438_k04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:29 2005
(137 letters)
>mm_chr18_34090599_34091134
Length = 536
Score = 250 bits (129), Expect = 3e-71
Identities = 135/137 (98%), Gaps = 1/137 (0%)
Strand = Plus / Minus
Query: 1 agattaagaagtcctgaagtaactttaaaggagaataaagcgacagttgccgtgttccca 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 agattaagaagtcttgaagtaactttaaaggagaataaagcgacagttgccgtgttccca 277
Query: 61 tgttgtccatgcacatttctttacttaacactccatcacagcagacgccaaatgcataac 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 276 tgttgtccatgcacatttctttacttaacac-ccatcacagcagacgccaaatgcataac 218
Query: 121 agggcaaccccagtgag 137
|||||||||||||||||
Sbjct: 217 agggcaaccccagtgag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 137
Length of database: 536
Length adjustment: 8
Effective length of query: 129
Effective length of database: 528
Effective search space: 68112
Effective search space used: 68112
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
