Query= MSMg01no441_h15.b1 MSMg01no441_h15.b1 CHROMAT_FILE:
MSMg01no441_h15.b1 PHD_FILE: MSMg01no441_h15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:16 2005
(650 letters)
>mm_chr18_46493631_46494679
Length = 1049
Score = 967 bits (500), Expect = 0.0
Identities = 541/558 (96%), Gaps = 10/558 (1%)
Strand = Plus / Minus
Query: 9 gaattcatatatttactatagaaattggaaaagtggatttgttttggagactagatatca 68
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 550 gaattcatatatttaatatagaaattggaaaagtggatttgttttggagactaggtatca 491
Query: 69 gttggctccacttgagagtctgaatatgcgagagagcgtgtttatttgcctgtctacatt 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gttggctccacttgagagtctgaatatgcgagagagcgtgtttatttgcctgtctacatt 431
Query: 129 ctaactagaaggcttcctcctcttgctactgacagatcacgacaagaacattccaatttt 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ctaactagaaggcttcctcctcttgctactgacagatcacgacaagaacattccaatttt 371
Query: 189 cacgcatgaaagatgaaaaaatgttttctcatttgcagtcaagtgcagatcgttcctttt 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 cacgcatgaaagatgaaaaaatgttttctcatttgcagtcaagtgcagatcgttcctttt 311
Query: 249 aaaaatccgtctctcggctgacacctggtgtattaagtctaaaatgcagttttataaagg 308
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 310 aaaaatccgtctctcggctgacacctggtggactaagtctaaaatgcagttttataaagg 251
Query: 309 aaagattgtcttctcaagatcccacaggtaggaaatcattaagacttagagccaaattga 368
||||||||||||||| |||| |||||||||||||||| | ||| |||||||||||
Sbjct: 250 aaagattgtcttctc-agatgccacaggtaggaaatc--t-----tta-agccaaattga 200
Query: 369 ctgaaggctaattttgcttatattgctggcattgagttatcccgaaatagccatgatgct 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ctgaaggctaattttgcttatattgctggcattgagttatcccgaaatagccatgatgct 140
Query: 429 gtgagatttgatggggaaatctctctgtgccgcactacgtctggcaggatgtaaatcctg 488
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 139 gtgagatttgatggggaaatctctctgtgccgcactacgtctggcaggctgtaaatcctg 80
Query: 489 ctcaaatgtctgcccatagttaactg-tgtagtgaaatgtaatgctttaaagctcttcca 547
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 79 ctcaaatgtctgcccatagttaactgacgtagtgaaatgtaatgctttaaagctcttcca 20
Query: 548 atgtgaagagacacatta 565
||||||||||||||||||
Sbjct: 19 atgtgaagagacacatta 2
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1049
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1039
Effective search space: 664960
Effective search space used: 664960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no441_h15.g1 MSMg01no441_h15.g1 CHROMAT_FILE:
MSMg01no441_h15.g1 PHD_FILE: MSMg01no441_h15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:16 2005
(537 letters)
>mm_chr18_46322515_46323451
Length = 937
Score = 926 bits (479), Expect = 0.0
Identities = 529/559 (94%), Gaps = 23/559 (4%)
Strand = Plus / Plus
Query: 1 cttgctggaatggaatggatctaacaattccatccacttgagaactgctcaccaagatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 cttgctggaatggaatggatctaacaattccatccacttgagaactgctcaccaagatgg 239
Query: 61 aatacactgagcagctgtgttctggggaagagaatgactcctctgtggaggtacagaggg 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 240 aatacactgagcagctgtgttctggggaggagaatgactcctctgtggaggtacagaggg 299
Query: 121 gaggctgacagcatgta---------------------ttaggcttcagtgaaaacttag 159
||||||||||||||||| ||||||||||||||||||||||
Sbjct: 300 gaggctgacagcatgtattaggcttcagtgaaaaggttttaggcttcagtgaaaacttag 359
Query: 160 gaaatgcaattgaaaggagggcttccttgaagctgacctcacagtatttacaaggaaggt 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gaaatgcaattgaaaggagggcttccttgaagctgacctcacagtatttacaaggaaggt 419
Query: 220 ccaaattagctctccaagtagttctgagttgccttgggctttgagcaaagatttgattcc 279
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 420 ccaaattagctctcaaagtagttctgagttgccttggactttgagcaaagatttgattcc 479
Query: 280 gccattgtatctaatacaggggcgagatgggactttgcaagtatagtgcaggggttacaa 339
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 480 accattgtatctaatacaggggcgagatgggactttgcaagtatagtgcagggattacaa 539
Query: 340 gggcaccttgctgtttaaaacaagggctcagctcagatcttccactacaggtgtttgctt 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 gggcaccttgctgtttaaaacaagggctcagctcagatcttccactacaggtgtttgctt 599
Query: 400 ggctttgcctcttctccatgaactagatgtactggctggttttgtgtatcaacttgacac 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ggctttgcctcttctccatgaactagatgtactggctggttttgtgtatcaacttgacac 659
Query: 460 aggctggagttatcacagagaaaggagcttcagttggggaagtgcttccatgaa-atcca 518
||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct: 660 aggctggagttatcacagagaaaggagcttcagttggggaagtgcctccat-aagatcca 718
Query: 519 gctgtggggcattttctca 537
||| |||||||||||||||
Sbjct: 719 gctatggggcattttctca 737
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space: 488529
Effective search space used: 488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
