BAC Information

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BAC

Clone NameMSMg01-441I05
Chromosome18 (Build37)
Map Location 59,532,092 - 59,703,511
singlet/doubletdoublet
Overlap gene4833446K15Rik
Upstream geneSlc27a6, Isoc1, Adamts19, A730017C20Rik
Downstream geneLOC667549, EG240327, LOC546714, EG225594, F830016B08Rik, LOC667578, EG667584, LOC435565, Iigp1, EG629292, LOC667597, 2010002N04Rik, Dctn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441I05.T7 (MSMg01no441_i05.b1)MSMg01-441I05.TJ (MSMg01no441_i05.g1)
ACCAG531377AG531378
length787750
length of high quality
(start - end)		143 (74 - 216)629 (79 - 707)
definitionCHROMAT_FILE: MSMg01no441_i05.b1 PHD_FILE: MSMg01no441_i05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:19 2005CHROMAT_FILE: MSMg01no441_i05.g1 PHD_FILE: MSMg01no441_i05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,532,092 - 59,532,232)(59,703,014 - 59,703,511)
sequence
GGATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAAAGAATCCGCG
GAATTCCAGAAATACGAAACAGTCAAGTGAACAAACATACACATATACAT
AAAACCAGTGTGCTGACAGTAGTCAAGATAGGAAATCATCCTATATGCCC
ATTGATGGATGCATGAATAAAGAAGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTNNNNNNNNNGNNNNNNNNNNNNTNNNNNNNTTTTTT
TTATTTTAGNGNTTTTTTTGGNNNNGTGTGGTTGTTGTGTTTGGTTGTGG
TTGTTGGNGGGTTTTTTTGGTTTTTGGGGNNGGNGGGGGGNGNGGGGGGG
GGGGTTTTTTTTTTTTGTTATGGTGTGGGTGTGTTTTTTTTTTTTTGTTG
TTTTTTTTTTTTTTTNCCCNGNGTTATTTTTGTTGTTTTGTCGTTGTTTT
TTTTCTATTTCCCTCTTTTCTTTGCCATTTGTTTTGTTATTTATTTCTCT
ATTCCTATATTACCTATCTCTAACTCCTCCTTTTTACCCCCCCGCTTTTT
TTTATTTTCTCTTTACGTTTTTTGCTAATACTTTTTCATCTTTAGCTATT
TTTACTTTTCCTCTTTCTTTTCTTCCCTTTTTTTCCTACGCCCCTCCCCT
CCCTTTTTTGCCCCCCTTTTATCTCCTTTTTTTTTTAACGATAGAGCGAC
CACGCCCATTACAGTATCTTTTTTTTTCCTCCATAACCGCTTTTTCTTCT
TTTCCTATTACTTTCTATCTATTCTCCCTTATCTTTG

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCTACATAGGTTCTACATGG
GATTATAAAATGAACTAAATAATAGAAAGACCCAATGACCTTTGAGAATT
TCCTATGGAAAGCAGGTTCTTACCAAATTTAGAGTTGGAGAAAATATTGC
ACTCTCAAAACATGAAGCCAAGAAAATACCACCTAAGCCATTCTATTCAG
TATCTAATCAAAGTGTTCTATAGACAGACACTTGCTGAAATGTTCAAGCA
ACTTTTCTCACATGAGTTTCTCTGTGACTTGATTTCCTCCATCTATAAGT
TTCCAAATCTTACAAGAAGGTTTAGTTTGTTTCCCTAACTTCTTTCTCAG
TCCTTTTATCCTTTGTGTAGAGAAAGGCCATTGATTTGTTTGAGTTAATT
TTATATCCAGCTACTGCAATGAAGCTGTTTATCAGATTTAGGAGTTCTTT
GGTGGAATTTTTAGGGTCATTTATATATATTATCATATCATCTGCAAATA
GTGATATTTTGACTTCTTTCTTTCCAATTTGTATTCCCTTGATCTCCTTT
TGTTTTCTAATTGCTCTGGCTAGGACTTCAAGTACTATATTGAATAGCTA
AGGAGAAAGTTGGCGGCAGCCTTGCCTAGTCCCTGATTTTAGTGGGATTG
CTTCAGGTTCCTCTCCATTTAGTTTGATGTTGCCTACTGGGTTGCTGCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_i05.b1 MSMg01no441_i05.b1 CHROMAT_FILE:
MSMg01no441_i05.b1 PHD_FILE: MSMg01no441_i05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:19 2005
         (143 letters)



>mm_chr18_59531892_59532434
          Length = 543

 Score =  273 bits (141), Expect = 4e-78
 Identities = 141/141 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagtgaacaaacatacacatatacataaaaccagtgtgctgacagtagtcaagatagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagtgaacaaacatacacatatacataaaaccagtgtgctgacagtagtcaagatagga 260

                                                                       
Query: 61  aatcatcctatatgcccattgatggatgcatgaataaagaagtgtgtgtgtgtgtgtgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatcatcctatatgcccattgatggatgcatgaataaagaagtgtgtgtgtgtgtgtgtg 320

                                
Query: 121 tgtgtgtgtgtgtgtgtgtgt 141
           |||||||||||||||||||||
Sbjct: 321 tgtgtgtgtgtgtgtgtgtgt 341


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 143
Length of database: 543
Length adjustment: 8
Effective length of query: 135
Effective length of database: 535
Effective search space:    72225
Effective search space used:    72225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no441_i05.g1 MSMg01no441_i05.g1 CHROMAT_FILE:
MSMg01no441_i05.g1 PHD_FILE: MSMg01no441_i05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:19 2005
         (629 letters)



>mm_chr18_59703014_59704042
          Length = 1029

 Score =  932 bits (482), Expect = 0.0
 Identities = 494/498 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcctacataggttctacatgggattataaaatgaactaaataatagaaagacccaatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 atcctacataggttctacatgggattataaaatgaactaaataatagaaagacccaatga 439

                                                                       
Query: 61  cctttgagaatttcctatggaaagcaggttcttaccaaatttagagttggagaaaatatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 cctttgagaatttcctatggaaagcaggttcttaccaaatttagagttggagaaaatatt 379

                                                                       
Query: 121 gcactctcaaaacatgaagccaagaaaataccacctaagccattctattcagtatctaat 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gcactctcaaaacacgaagccaagaaaataccacctaagccattctattcagtatctaat 319

                                                                       
Query: 181 caaagtgttctatagacagacacttgctgaaatgttcaagcaacttttctcacatgagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 caaagtgttctatagacagacacttgctgaaatgttcaagcaacttttctcacatgagtt 259

                                                                       
Query: 241 tctctgtgacttgatttcctccatctataagtttccaaatcttacaagaaggtttagttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tctctgtgacttgatttcctccatctataagtttccaaatcttacaagaaggtttagttt 199

                                                                       
Query: 301 gtttccctaacttctttctcagtccttttatcctttgtgtagagaaaggccattgatttg 360
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 198 gtttccctaacttctttctcagtccttttatcctttctgtagagaaaggccattgatttg 139

                                                                       
Query: 361 tttgagttaattttatatccagctactgcaatgaagctgtttatcagatttaggagttct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 tttgagttaattttatatccagctactgcaatgaagctgtttatcagatttaggagttct 79

                                                                       
Query: 421 ttggtggaatttttagggtcatttatatatattatcatatcatctgcaaatagtgatatt 480
            |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 78  ctggtggaatttttagggtcatttacatatattatcatatcatctgcaaatagtgatatt 19

                             
Query: 481 ttgacttctttctttcca 498
           ||||||||||||||||||
Sbjct: 18  ttgacttctttctttcca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space:   630761
Effective search space used:   630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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