BAC Information

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BAC

Clone NameMSMg01-442D16
Chromosome18 (Build37)
Map Location 45,969,108 - 45,969,547
singlet/doubletsinglet
Overlap genenone
Upstream geneYthdc2, LOC626309, LOC225457, LOC100042900, Kcnn2
Downstream geneTrim36, LOC100042905, Pggt1b, Ccdc112, EG225468, LOC100042916, Mospd4, LOC100042204, Fem1c, Ticam2, Eif1a, LOC100042226, Cdo1, Atg12, Ap3s1, LOC100042950
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442D16.T7 (MSMg01no442_d16.b1)MSMg01-442D16.TJ (MSMg01no442_d16.g1)
ACCAG531924AG531925
length763771
length of high quality
(start - end)		371 (108 - 478)440 (78 - 517)
definitionCHROMAT_FILE: MSMg01no442_d16.b1 PHD_FILE: MSMg01no442_d16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:18 2005CHROMAT_FILE: MSMg01no442_d16.g1 PHD_FILE: MSMg01no442_d16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAATAATTGGGGCGCTATACGACTACTATTGCAAGAGATCCGCGGAATT
CTCAGTTTACTGTACCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTT
CCTTCTTTCTTTCCTTTCTGCCTTTTCTTTCTTTCTTTCTTTCTTTCTTT
CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT
TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCTTTCT
TTCTTTCTTTCTTTCTTTCCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTC
TTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTCTC
ACCTCTGGCTTAATTGATGAGCATTTCTCAAATAGTATTTAATACTAATG
GTGATAATCTGTATTCTCTTTAAAAAGTGGCTGAAAGCAGGTTTAATAAT
TCCAATGAGTGTGAAGGTAAATTCTAGCTAACATGTGAGGGACTAATGAT
ATTCCACAAACTCCTGTTTTTTTTCTTACATCTTTGCTTCAGTCTTTTCT
TTATTACAAAATTAATGGACCAGGCTCAGAGTTTGGCGTACTTTATTTTT
AAAACTTTTCTGATCAACATCTATATTTATGTACCTAACAAAAATCTTTA
ATATGGATATTTATCATTTTACGCATTTTATATAATATACTGATCAATTG
TATGTACATACTG

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACCTTGGAGGGACACTGTAGACC
TACTTGGTTCTGAGAAGTCTACAAACTCTGTATGGTTTCTTTTTACCAGT
ATCCTCTGAAGTATATCTTCAGAAATGGCTTCAGAGAGGACTGGACATTG
TCTGATGGCTTGTCTGAACCCCATGGTTGTAACCACCTGAAACCTCACCA
ACCTTAGCAACCTTAAAAATGAGAAAACCACACATGGTATGACATATACT
ACTATACAACATGAAGTACCGAGTCCTGATTATAAGATATTAGTGCCAAA
ATAGGTGAGCCAGAATCCTGTCAAGCTTGCAGGAATCTTCCATTTACTAA
AAGAACATAAAAGAAAATCAAGTTAAAGGAGAAGCCCACAAATCCAAAGG
GCAACATCTGTAAGAACTAAATGGATCCATGCAACAAATCACCTACAAAA
GACAAGAGAGGCAGGGGCTGGGGGAACTAAAATACAAAGGAGTAAACAAT
AGACAAATTACTGTGAACTTGGTTGTTCTGATTAAACTAACATTAAAATT
TCCCCTATTGATAATTGGACATGTCTGACTAGGAAGTCCGAATTTTGGAA
ATACCCAGCCTTTTTTTTCTTTATCCTTATTAAACTGGTGGGTTGATTCT
TTTTTTGTTCTTTTTCTCCCCCCCATTCTCTCCTTTTATTTTCTTTCCCG
CCCTTACCTCCTTCCCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_d16.g1 MSMg01no442_d16.g1 CHROMAT_FILE:
MSMg01no442_d16.g1 PHD_FILE: MSMg01no442_d16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:18 2005
         (440 letters)



>mm_chr18_45968908_45969747
          Length = 840

 Score =  781 bits (404), Expect = 0.0
 Identities = 431/440 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   accttggagggacactgtagacctacttggttctgagaagtctacaaactctgtatggtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accttggagggacactgtagacctacttggttctgagaagtctacaaactctgtatggtt 260

                                                                       
Query: 61  tctttttaccagtatcctctgaagtatatcttcagaaatggcttcagagaggactggaca 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 tctttttaccagtatcctctgaagtatagcttcagaaatggcttcagagaggactggaca 320

                                                                       
Query: 121 ttgtctgatggcttgtctgaaccccatggttgtaaccacctgaaacctcaccaaccttag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtctgatggcttgtctgaaccccatggttgtaaccacctgaaacctcaccaaccttag 380

                                                                       
Query: 181 caaccttaaaaatgagaaaaccacacatggtatgacatatactactatacaacatgaagt 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaccttaaaaatgagaaagccacacatggtatgacatatactactatacaacatgaagt 440

                                                                       
Query: 241 accgagtcctgattataagatattagtgccaaaataggtgagccagaatcctgtcaagct 300
           |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 accgagtcctgattgtaagatattagtgccaaaataggtgaaccagaatcctgtcaagct 500

                                                                       
Query: 301 tgcaggaatcttccatttactaaaagaacataaaagaaaatcaagttaaaggagaagccc 360
           |||||||||||| |||||||||||||| |||||||||||| |||||||||||||||| ||
Sbjct: 501 tgcaggaatctttcatttactaaaagagcataaaagaaaagcaagttaaaggagaagtcc 560

                                                                       
Query: 361 acaaatccaaagggcaacatctgtaagaactaaatggatccatgcaacaaatcacctaca 420
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 561 acaaatccaaagggcaacatctgtaagaactaagtggatccatgcaacaaatcacctaca 620

                               
Query: 421 aaagacaagagaggcagggg 440
           ||||||||||||||||||||
Sbjct: 621 aaagacaagagaggcagggg 640


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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