BAC Information

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BAC

Clone NameMSMg01-443C02
Chromosome18 (Build37)
Map Location 11,807,629 - 11,807,955
singlet/doubletsinglet
Overlap genenone
Upstream geneMib1, LOC665296, 1010001N08Rik, Gata6, LOC665310, LOC100040148
Downstream geneRbbp8, LOC621998, Cables1, 6030446N20Rik, Riok3, 3110002H16Rik, Npc1, Ankrd29, Lama3, 2810439F02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443C02.T7 (MSMg01no443_c02.b1)MSMg01-443C02.TJ (MSMg01no443_c02.g1)
ACCAG532610AG532611
length729754
length of high quality
(start - end)
245 (83 - 327)331 (80 - 410)
definitionCHROMAT_FILE: MSMg01no443_c02.b1 PHD_FILE: MSMg01no443_c02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:38 2005CHROMAT_FILE: MSMg01no443_c02.g1 PHD_FILE: MSMg01no443_c02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAAAATAG
CGCGGAATTCTCACCTGGATACCACCAAATGGCAGAGAAGCACCTGAAAA
AATGCTCAACATCCTTAATCATCATTGAAACGCAAATCAAAACAACCCTG
AGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGA
CAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTT
GGTGGGATTGCTTGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTC
CTCAGAAAACAGGATATAGTACTACCGTTTTTTTTCTGCAATACCTCTCC
TGGGCATATATCCAGAATATGCCCCAACTGCCAAGAAGGACACATGCTCC
ACTATGTTCACAGCAGCCTTATCTACAATATTCTGAATTTGTAATTAACC
CACGATGCCCTTCTTCAGATTTATGCATACCCATTATGTGTTACATCCAC
ACAATGCAGTACTACTCACCTATTATATACAATGAATTCATGATATTCCT
ATCCTAACGCATGTATCTGGAGGTTATCTTCCTGACTCATGTACCACACT
CCCTATGGAACTTCCTCAATATGTACCCCTCGAAAATCGGATAACATTCC
TCTCACCTTCCATTTCCCCTTAAGTCACATATTTTTTTCCCTATTCTCTT
GACACTCTCTGATACATTGACGTTCTGCA
TTTATCCGATGCAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGATGCAAAATGCCTACTCC
TAGCTTCATCTTGGTTCTTTATACAAATTACAAAGTCTCATCTGTTCCTT
TAACACTAACTTGTTCACTATATACAGTAGGCCTACATCCAAAACAGTAA
TCACTAAACACATGGCTTTGAGCACATGAAACGTGTCTGAGCTGAACTGA
GATGAGCCATTTAGGTAAGAGACACATTAGTCTTCAAAAACTTAGTTATG
AAAGCAGGGTGTAGTGTCACTGGCCTATAATTCCAGAATGTGGGAGACAG
AGGCAGGAGATTTCTAGGAGTTTAAGGCTGTCCTGAGTTAGTATGAGATG
CTGCGTTATAAAGAAATAATAATACAAAGGGTTTCTCTGTGTAGCCCTGG
TTGTCCTGGAACTCATTCTGCAGACCAGGTTGGTCTTGAACTCAGATATC
CGCCTGCCTCTGCCTCACGAGCGCTGTTACCAAAGGTGTACACCACCAAC
GTTTTATTTTAATCTCGTATTCTCAATATGCCGAAATATGAACCTCAACC
CCCTCCTGCCGTTTCCCTTTTTTTTTACCTCCACCCTTATTTATATTTTT
TTCATTCACTCCCCATTTATCCACATTCCACTTATCCTTTCTCCCTATTC
ATCTTTTTCTTATCTCTCCTTCACCCCCTCTATCTCTTTTCCCCTTTCTA
TTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_c02.g1 MSMg01no443_c02.g1 CHROMAT_FILE:
MSMg01no443_c02.g1 PHD_FILE: MSMg01no443_c02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:38 2005
         (331 letters)



>mm_chr18_11807429_11808159
          Length = 731

 Score =  617 bits (319), Expect = 0.0
 Identities = 325/327 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagatgcaaaatgcctactcctagcttcatcttggttctttatacaaattacaaagtctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 cagatgcaaaatgcctactcctagcttcatcttggttctttatacaaattagaaagtctc 260

                                                                       
Query: 61  atctgttcctttaacactaacttgttcactatatacagtaggcctacatccaaaacagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctgttcctttaacactaacttgttcactatatacagtaggcctacatccaaaacagta 320

                                                                       
Query: 121 atcactaaacacatggctttgagcacatgaaacgtgtctgagctgaactgagatgagcca 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 atcactaaacacatggctttgagcacatgaaacgtggctgagctgaactgagatgagcca 380

                                                                       
Query: 181 tttaggtaagagacacattagtcttcaaaaacttagttatgaaagcagggtgtagtgtca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttaggtaagagacacattagtcttcaaaaacttagttatgaaagcagggtgtagtgtca 440

                                                                       
Query: 241 ctggcctataattccagaatgtgggagacagaggcaggagatttctaggagtttaaggct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctggcctataattccagaatgtgggagacagaggcaggagatttctaggagtttaaggct 500

                                      
Query: 301 gtcctgagttagtatgagatgctgcgt 327
           |||||||||||||||||||||||||||
Sbjct: 501 gtcctgagttagtatgagatgctgcgt 527


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)