BAC Information

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BAC

Clone NameMSMg01-444A05
Chromosome18 (Build37)
Map Location 17,774,803 - 17,775,012
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh2, LOC665519, 1700001G01Rik, 4921533I20Rik
Downstream geneLOC100040647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444A05.T7 (MSMg01no444_a05.b1)MSMg01-444A05.TJ (MSMg01no444_a05.g1)
ACCAG533281AG533282
length724714
length of high quality
(start - end)
217 (44 - 260)316 (331 - 646)
definitionCHROMAT_FILE: MSMg01no444_a05.b1 PHD_FILE: MSMg01no444_a05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:47 2005CHROMAT_FILE: MSMg01no444_a05.g1 PHD_FILE: MSMg01no444_a05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATATCAGTATAACTTGCAATGAACTGTGATAAATGTCATGATCAAAG
CACTAGTGCTCAGAAAGGGATGTCAGAAGTCTGATGGGAGAAGTGCTGTC
TTCATAAACAGCATTGTTAGTTGCTACTAGGAGGACTCTTAAATGTGAAA
TATTTATCTTATTTCTTTTCCATTCTTGCTGCCTTCCCANNTTTATCCAN
NTTTCTCATGGGCCAATNNNTAGGGTCCCTAACTTTTTCCACCCCCTAAA
NNCCCNNNNNNNNNNCNNNCCCCNCTTTCNCCTCNCTCNTTTCCTTTCNT
TTTTCCCCCCCCCCTCCCCTCTTTTTTTTTTTTTTTTCCCTCCCTTTTCT
TTTCCCTCCTCCTCCTCCCCTTCTTTTCTCTTCTCTCTTTTCCCTTCTTT
CTTTTCCTTTTTTTCTCCCCCCCCCTTTTTCCCCCTCCTTCCCTTTTTTC
TCCTTTTTTTTTTTTCCTTTTCTTCCTTTCCTTTTTCCCCTTTCTCCCTT
TTTCCCTTTCCCCTTCCCCTTTTCTCCTCTTTCTTTCTTTTCTCCCTTTC
CCCNCTTTCTCTTTTTTTTTCTCCTTTCCCTTTCTCTTTCCCTCCCTCTT
TTTTTTTCTCTCCCTCTTTCTCCTTTTTCTTTTTCCCTCTCCCCTTTCCT
CCCCCTTTTTCCCCCCCCCCCCCC
GGAAANNACTCGATGATAGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTGACAAGAGGAGGTCATTGACATCAAAATCA
AATAGGCTTAACAGATATCTGCTTTCTATCTCACCCAGACACCAAGTAAT
ATATATTCAACTCAGCACCACATAGAAGTTTTTCTAAAATAGACCATATT
TAGGGACACAAAATTAGTCATTCCTAATTCAAAAAGACTGAAAGCATTCC
TTGTGTTCTATTTGACCTCAAATTCTGCAATGTGGCAGGATACAGAATCA
ACTTATACAAATCATAGAGAATGTTTTTATGAATGCACTGCCATTCATAA
TAGATTCAGAGAAAACAATATATAGCAATAAATGTAGCAAGGGAACCAAC
AAACCTCTAAACTGATAATTTTAAGCCTCTGTAGAACATGTTAGAGAAAG
ACACTAGAAAAATGGGAAGATAACCCCTGTTCATTAACTGGTAGACTTAG
TATGAGAAAGTAACCAATTTACCAAATGCCACTTGCAGATTAAATGCAAT
TGCAATTAAAACCCATATCCCATTCTTCATAGATAGAAAAAAAATTAACT
GACTTAAAAGTCCAAATGGAACTAGAATGTATCTCAGAGAGCCCAAACAA
TTATGAGTAAAAAGACAATGCTGGAGGTTTATCATTCCAGATCTTAAAAA
ATATCACCAAACCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_a05.b1 MSMg01no444_a05.b1 CHROMAT_FILE:
MSMg01no444_a05.b1 PHD_FILE: MSMg01no444_a05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:47 2005
         (217 letters)



>mm_chr18_17774599_17775212
          Length = 614

 Score =  375 bits (194), Expect = e-108
 Identities = 208/214 (97%), Gaps = 5/214 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatatcagtata-acttgcaatgaactgtgataaatgtcatgatcaaagcactag 63
           ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gaattcatatcagtatataattgcaatgaactgtgataaatgtcatgatcaaagcactag 355

                                                                       
Query: 64  tgctcagaaagggatgtcagaagtctgatgggagaagtgctgtcttcataaacagcattg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tgctcagaaagggatgtcagaagtctgatgggagaagtgctgtcttcataaacagcattg 295

                                                                       
Query: 124 ttagttgctactaggaggactcttaaatgtgaaatatttatcttatttcttttccattct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ttagttgctactaggaggactcttaaatgtgaaatatttatcttatttcttttccattct 235

                                             
Query: 184 tgctgccttcccanntttatccanntttctcatg 217
           |||||||||||||  ||||||||  |||||||||
Sbjct: 234 tgctgccttccca--tttatcca--tttctcatg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 614
Length adjustment: 9
Effective length of query: 208
Effective length of database: 605
Effective search space:   125840
Effective search space used:   125840
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)