Query= MSMg01no444_f06.b1 MSMg01no444_f06.b1 CHROMAT_FILE:
MSMg01no444_f06.b1 PHD_FILE: MSMg01no444_f06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:12 2005
(254 letters)
>mm_chr18_48808328_48808978
Length = 651
Score = 441 bits (228), Expect = e-128
Identities = 247/254 (97%), Gaps = 3/254 (1%)
Strand = Plus / Minus
Query: 1 cagacatttcatgccattatgtactataaaaaaagagaaacaaacaaacaaacaagaaac 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 451 cagacatttcatgccattatgtactataaaaagagagaaacaaacaaacaaacaaaaaac 392
Query: 61 cctgagagtgaatgattttttttttggtcaaatttattagaggttgaaactagttttgtg 120
||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 391 cctgagactgaatgattttttttt--gtcaaa-ttattagaggttgaaactagttttgtg 335
Query: 121 gcagtacacggtgagctcatgcccttttagttgctgagattggtctcagaattctctagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gcagtacacggtgagctcatgcccttttagttgctgagattggtctcagaattctctagt 275
Query: 181 tcaatttatttctttactgtacattagtaattttgttgtgaatggtttattgaccccatg 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 274 tcaatttatttctttactgtacattagtaattttgttgtgaatggtttattgacccaatg 215
Query: 241 catgaaacttcaag 254
||||||||||||||
Sbjct: 214 catgaaacttcaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 651
Length adjustment: 9
Effective length of query: 245
Effective length of database: 642
Effective search space: 157290
Effective search space used: 157290
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no444_f06.g1 MSMg01no444_f06.g1 CHROMAT_FILE:
MSMg01no444_f06.g1 PHD_FILE: MSMg01no444_f06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:12 2005
(508 letters)
>mm_chr18_48647335_48648242
Length = 908
Score = 899 bits (465), Expect = 0.0
Identities = 506/542 (93%), Gaps = 34/542 (6%)
Strand = Plus / Plus
Query: 1 ttgaaaccctccccaaaagaataattccacacaaatagctgattttgcaaatacatttaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgaaaccctccccaaaagaataattccacacaaatagctgattttgcaaatacatttaa 260
Query: 61 ttttcaagtgaatttttactatgaaaaagaatattttcatatgaagtataatacatgaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttcaagtgaatttttactatgaaaaagaatattttcatatgaagtataatacatgaaa 320
Query: 121 gattaacttaaatattctaacaagttgcattttatcataaggagaaagtttccttaactc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gattaacttaaatattctaacaagttgcattttatcataaggagaaagtttccttaactc 380
Query: 181 tctcttacacaaattgaatgtttattgagataattataattggttacccaatatcaaatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctcttacacaaattgaatgtttattgagataattataattggttacccaatatcaaatg 440
Query: 241 gtcagtcctgaaaacatagatatgtgtaactttatgcagactgattagtttgtctttatg 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcagtcctgaaaacgtagatatgtgtaactttatgcagactgattagtttgtctttatg 500
Query: 301 gccttaggattatattatttatacatgtgtacatatgtatctttcttgtgtgtgtgtgtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gccttaggattatattatttatacatgtgtacatatgtatctttcttgtgtgtgtgtgtg 560
Query: 361 tgtgtgt----------------------------------aataacagttaatgaaaag 386
||||||| |||||||||||||||||||
Sbjct: 561 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaataacagttaatgaaaag 620
Query: 387 ggggccaagatttgaaaaagaacaatgaattgtttatggaagtgtttgaaatgaggaatg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggggccaagatttgaaaaagaacaatgaattgtttatggaagtgtttgaaatgaggaatg 680
Query: 447 gagtaatggtataattatattatagcttgnaaaagataaaattattgtaaatagatgaaa 506
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 681 gagtaatggtataattatattatagcttgtaaaagataaaattattgtaaatagatgaaa 740
Query: 507 ta 508
||
Sbjct: 741 ta 742
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space: 447204
Effective search space used: 447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
