Query= MSMg01no445_m11.b1 MSMg01no445_m11.b1 CHROMAT_FILE:
MSMg01no445_m11.b1 PHD_FILE: MSMg01no445_m11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:06 2005
(683 letters)
>mm_chr18_17651548_17652630
Length = 1083
Score = 1230 bits (636), Expect = 0.0
Identities = 668/680 (98%), Gaps = 4/680 (0%)
Strand = Plus / Minus
Query: 6 aattctgtgtt--ttctttccctcgacttgttcattcaacagatatttgctatgtacttg 63
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950 aattctgtgttaat--tttccctcgacttgttcattcaacagatatttgctatgtacttg 893
Query: 64 gcatgtgccctgcaaaagcaaccataaagcaaagagacttccagctacatggaaatctga 123
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 892 gcatgtgccctgcaaaagcaaccataaagcaaagagacttccagctacatgaaaatctga 833
Query: 124 tcatctggaaactgaagatccagacttaaaagtaggaactaagtcaacaggtccacttac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 tcatctggaaactgaagatccagacttaaaagtaggaactaagtcaacaggtccacttac 773
Query: 184 tatgtgatgtcaacatactttttgatgctggcacagtctacacagccactgaagtccttc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 tatgtgatgtcaacatactttttgatgctggcacagtctacacagccactgaagtccttc 713
Query: 244 ccagtggaaaaccattccccaaggtgtttgttattttcttcagatgttttaaagtcattg 303
|||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||
Sbjct: 712 ccagtggaaaaccattccccaaggtgcttgtcattttcttcaggtgttttaaagtcattg 653
Query: 304 taattttttttaaagcaattaaaaattttgggcttaagtgtaaatggattaaaaaaattt 363
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 taatttttttaaaagcaattaaaaattttgggcttaagtgtaaatggattaaaaaaattt 593
Query: 364 ccatttatctgttaaatctaatctgaatagtgcttttatattgaatgtgcaaaaaacagt 423
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 592 ccatttatctgtcaaatctactctgaatagtgcttttatattgaatgtgcaaaaaacagt 533
Query: 424 caagagtgggtatttatagtacttaatcttagaactcaaattcagaaaagcttttttttt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 caagagtgggtatttatagtacttaatcttagaactcaaattcagaaaagcttttttttt 473
Query: 484 acgttttctcattataaactttgtagagttccttccttggcacaaaagaaaaataataaa 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 acgttttctcattataaactttgtagagttccttccttggcacaaaagaaaaataataaa 413
Query: 544 agtatcagagatattttaaatcactctaaaatttatatttacttccatttattaaatgca 603
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 agtaccagagatattttaaatcactctaaaatttatatttacttccatttattaaatgca 353
Query: 604 ttgagtactagctgtcaatctgggaaggtcaaagatctctaattgctcagaatatactgt 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ttgagtactagctgtcaatctgggaaggtcaaagatctctaattgctcagaatatactgt 293
Query: 664 aactagaagactgcaatata 683
||||||||||||||||||||
Sbjct: 292 aactagaagactgcaatata 273
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space: 722129
Effective search space used: 722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no445_m11.g1 MSMg01no445_m11.g1 CHROMAT_FILE:
MSMg01no445_m11.g1 PHD_FILE: MSMg01no445_m11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:06 2005
(466 letters)
>mm_chr18_17449525_17450390
Length = 866
Score = 874 bits (452), Expect = 0.0
Identities = 461/464 (99%)
Strand = Plus / Plus
Query: 1 cctaacatgcgttaaatctcacctgccagctcatttgcttttctctctctatcttggtaa 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 cctaacatgcgttaaatctcacctgccagctcatttgcttttctccctctatcttggtaa 260
Query: 61 tggggagaccgcagcatgatagaatagtacagaataaaacaccctttgcatttacatact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggggagaccgcagcatgatagaatagtacagaataaaacaccctttgcatttacatact 320
Query: 121 atttgagtccagggtatcattctttgccaaatcatagacccttacaatttcattcatcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttgagtccagggtatcattctttgccaaatcatagacccttacaatttcattcatcag 380
Query: 181 atctgtcacaagactttgcattttccagatcatctttcatagggtaggagagatcatggg 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 atctgtcacaagactttgcattttctagatcatctttcatagggtaggagagatcatggg 440
Query: 241 gtagtcttcagccctcttgaatgttaatggaaacatctgtagttctcttgatcccaactt 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcagtcttcagccctcttgaatgttaatggaaacatctgtagttctcttgatcccaactt 500
Query: 301 tagatgcagctgttgtggttggatctaaggaatgtcatctgcctgaagcttttctgactt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagatgcagctgttgtggttggatctaaggaatgtcatctgcctgaagcttttctgactt 560
Query: 361 ccctttgccatgattggtgacatttttgtttttctttatcatttggaagcctctgggatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccctttgccatgattggtgacatttttgtttttctttatcatttggaagcctctgggatt 620
Query: 421 ttctatggcacttggctgtcaacccttcttttttaaagcttcta 464
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttctatggcacttggctgtcaacccttcttttttaaagcttcta 664
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space: 390336
Effective search space used: 390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
