Query= MSMg01no446_o16.b1 MSMg01no446_o16.b1 CHROMAT_FILE:
MSMg01no446_o16.b1 PHD_FILE: MSMg01no446_o16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:35 2005
(242 letters)
>mm_chr18_75581869_75582510
Length = 642
Score = 387 bits (200), Expect = e-112
Identities = 237/262 (90%), Gaps = 21/262 (8%)
Strand = Plus / Plus
Query: 1 acacacacacacacagaactgtctctcacacagaaaattatctctcacacacagaatctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 acacacacacacacagaactgtctctcacacagaaaattatctctcacacacagaatctt 241
Query: 61 ctctcacatacactcaggactgtctctcatacagagattcttttctctctcacagaattc 120
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ctctcacacacactcagaactgtctctcatacagagattcttttctctctcacagaattc 301
Query: 121 tcttcctctcacaagattgtctctcacagacagaactgtctgtcacaggcagaattgtct 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 302 tcttcctctcacaagattgtctctcacagacagaactgtctctcacaggcagaattgtct 361
Query: 181 ctctcacacatg--------------------gaattctctcacacaagagaattctctc 220
|||||||||| | ||||||||||||| ||||||||||||||
Sbjct: 362 ctctcacaca-gaaaattctctctcacacacagaattctctcacataagagaattctctc 420
Query: 221 cctcacagacttttttctaaca 242
||||||||||||||||||||||
Sbjct: 421 cctcacagacttttttctaaca 442
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space: 147489
Effective search space used: 147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no446_o16.g1 MSMg01no446_o16.g1 CHROMAT_FILE:
MSMg01no446_o16.g1 PHD_FILE: MSMg01no446_o16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:35 2005
(467 letters)
>mm_chr18_75753944_75754810
Length = 867
Score = 841 bits (435), Expect = 0.0
Identities = 460/473 (97%), Gaps = 10/473 (2%)
Strand = Plus / Minus
Query: 1 cagaaggttctatcaggcatgagaggatgatcacaaagccagcatggtctagagagcttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 cagaaggttctatcaggcatgagaggatgatcacaaagccagcatggtctagagagcttt 550
Query: 61 tgtgagaagtagagtcacaggcctaagggaggccaggctacacactacctgcttcagggc 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 549 tgtgagaagtagagtcacaggcctaagggaggccaggctaaacactacctgcttcagggc 490
Query: 121 taatgttatgacaagaacacctgccctcccctgtgctgccctgctggagggtgggtgggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 taatgttatgacaagaacacctgccctcccctgtgctgccctgctggagggtgggtgggg 430
Query: 181 cttggtaagaggtggccagcagaggtgccaagcactcattgctgggaacagactatgagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 cttggtaagaggtggccagcagaggtgccaagcactcattgctgggaacagactatgagt 370
Query: 241 tggcccacttttt----cttacctatggggcacagaggcactgcgtcttctagccaccgg 296
|||||||| | ||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 369 tggcccac----taggccttacctatggggcacagaggcagtgcatcttctagccaccgg 314
Query: 297 tacacgagtctctgctaggagagcatctataacccatggtgggtgggtcaatctcaccat 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tacacgagtctctgctaggagagcatctataacccatggtgggtgggtcaatctcaccat 254
Query: 357 cccctgtggcctcactactcaccttatggcagtttgcaagagctagacacgcacaca--c 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 253 cccctgtggcctcactactcaccttatggcagtttgcaagagctagacacgcacacacgc 194
Query: 415 acacacgcacgcacgcatgcatgcacgaaccactttctggtggatgctactgg 467
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 acacacgcacgcacgcatgcatgcacgaaccactttctggtggatgctactgg 141
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space: 391649
Effective search space used: 391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
