Query= MSMg01no447_h04.b1 MSMg01no447_h04.b1 CHROMAT_FILE:
MSMg01no447_h04.b1 PHD_FILE: MSMg01no447_h04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:21 2005
(546 letters)
>mm_chr18_52959682_52960630
Length = 949
Score = 1000 bits (517), Expect = 0.0
Identities = 540/549 (98%), Gaps = 3/549 (0%)
Strand = Plus / Minus
Query: 1 catcaactcataaccatgttggtcttcttgtcgtataaataaatcccagtggtgttcagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 catcaactcataaccatgttggtcttcttgtcgtataaataaatcccagtggtgttcagt 690
Query: 61 acataggttgagaaggcgtacattcattaccttgtcaagccatatgcctgcaattcctca 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 689 acataggttgagaaggcgtacattcattaccttgtcaagccttatgcctgcaattcctca 630
Query: 121 ggacctaatacatttgatggaatgcatatcttcattatttactaagcctaaatcattttc 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 ggacccaatacatttgatggaatgcatatcttcattatttactaagcctaaatcattttc 570
Query: 181 agtcaaacatttccaggtctgacaattaagccaaggatttctgtttccaccttaatggta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 agtcaaacatttccaggtctgacaattaagccaaggatttctgtttccaccttaatggta 510
Query: 241 aatggcagattttctatgaaagacaattatttcaatgaagagattaaataagaaggtact 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 509 aatggcagattttctatgaaagacaattatttcaatgaagagattaagtaagaaggtact 450
Query: 301 tacacatattttcgagcaatttggcgagctgaagaactataaatataaaagaatacaaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 449 tacacatattttcgagcaatttggcgagctgaagaactataaatataaaagaagacaaca 390
Query: 361 gaagtatagaaaaaaa---ctctttaagctctgaatggataaattgctgcttgcaattga 417
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gaagtatagaaaaaaaaaactctttaagctctgaatggataaattgctgcttgcaattga 330
Query: 418 aaaccctcaattgttggttctaatactcaaaacagcactcaaaggaatagtgcacttgac 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aaaccctcaattgttggttctaatactcaaaacagcactcaaaggaatagtgcacttgac 270
Query: 478 tgtcgatacccgcataagcacctaatgatcgccttctgttccttgatgaccctgcaatgg 537
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 269 tgtcgataccagcataagcacctaatgatcgccttctgttccttgatgagcctgcaatgg 210
Query: 538 ctgactgca 546
|||||||||
Sbjct: 209 ctgactgca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 949
Length adjustment: 10
Effective length of query: 536
Effective length of database: 939
Effective search space: 503304
Effective search space used: 503304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no447_h04.g1 MSMg01no447_h04.g1 CHROMAT_FILE:
MSMg01no447_h04.g1 PHD_FILE: MSMg01no447_h04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:21 2005
(344 letters)
>mm_chr18_52905036_52905779
Length = 744
Score = 656 bits (339), Expect = 0.0
Identities = 342/343 (99%)
Strand = Plus / Plus
Query: 1 aaggaaactggttgttctgaaagtatctttgtcttttataagtgttaacagattggaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggaaactggttgttctgaaagtatctttgtcttttataagtgttaacagattggaact 260
Query: 61 gtgagtttgtagtttttggcaagcatgtttattttgtactgacagaactatttggcttgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgagtttgtagtttttggcaagcatgtttattttgtactgacagaactatttggcttgg 320
Query: 121 caaaaagcgttttggtcaggtagacccatgacccaggccatatatcactggggtaatgtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaaaagcgttttggtcaggtagacccatgacccaggccatatatcactggggtaatgtc 380
Query: 181 aggactgctcagaaagtctaggagaacgtgatctgcctaaacatgcagtaaagagacgcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggactgctcagaaagtctaggagaacgtgatctgcctaaacatgcagtaaagagacgcc 440
Query: 241 cttaaatgagctggtggccaaatgcagatggcaattgcacacactgtgtagatctggaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 cttaaatgagctggtggccaaatgcagatggcaattgcacacactgtgtagatctagaat 500
Query: 301 gacagagtggttcagacgagctcgtgccttaatggcatattct 343
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gacagagtggttcagacgagctcgtgccttaatggcatattct 543
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space: 246225
Effective search space used: 246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
