Query= MSMg01no448_l22.b1 MSMg01no448_l22.b1 CHROMAT_FILE:
MSMg01no448_l22.b1 PHD_FILE: MSMg01no448_l22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:07 2005
(512 letters)
>mm_chr18_18136145_18137053
Length = 909
Score = 868 bits (449), Expect = 0.0
Identities = 493/511 (96%), Gaps = 9/511 (1%)
Strand = Plus / Minus
Query: 5 gaattccttagac-attaacacatattaatatttcacttctg-tttttttgttcagataa 62
||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 709 gaattccttagacaattaatacatattaatatttcacttctgttttttttgttcagataa 650
Query: 63 tgaagaaataatagaccttaattatatttgaaaaataaattggacagtattttggc-att 121
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 649 tgaagaaataatagaccttaattatatttgaaaaataaattggacaatattttggcaatt 590
Query: 122 ttttttctgtctaataagtaaaactagatctgtgaatcctatgcttgacaagtaaacaag 181
||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 589 ttttttctgtctaataagtaaaa------ctgtgaatcctatgcttgacaagtaaacaag 536
Query: 182 gaggcaaagacagagagagattgagacacataaccagagacagagaaacacaaaaagata 241
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 535 gaggcaaagacagagagagaccaagacatataaccagagacagagaaacacaaaaagata 476
Query: 242 tcaaccaaaatttgaaatattttaagtaaaattgtctgcaatctaatatgacaaaataac 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tcaaccaaaatttgaaatattttaagtaaaattgtctgcaatctaatatgacaaaataac 416
Query: 302 tgcacatgtaggcattgcatctatgtgttctccttgacatttgatatggtgaatgagtgg 361
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 415 tgcacatgtaggcgttgcatctacgtgttctccttgacatttgatatggtgaatgagtgg 356
Query: 362 aagagagcctcaattgtaatgtgatatattacttctctttcacgttctcacacaaccttt 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 aagagagcctcaattgtaatgtgatatattacttctctttcacgttctcacacaaccttt 296
Query: 422 aggaacttgttctcacattatttgttgtgcagctatggataacgtcattctctttctagt 481
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 295 aggaacttgttctcacattatttgttgtgcggctatggataacgtcattctctttctagt 236
Query: 482 ttctcttttatttacagctatgtttttcttc 512
|||||||||||||||||||||||||||||||
Sbjct: 235 ttctcttttatttacagctatgtttttcttc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 6
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 909
Length adjustment: 10
Effective length of query: 502
Effective length of database: 899
Effective search space: 451298
Effective search space used: 451298
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no448_l22.g1 MSMg01no448_l22.g1 CHROMAT_FILE:
MSMg01no448_l22.g1 PHD_FILE: MSMg01no448_l22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:07 2005
(396 letters)
>mm_chr18_18000652_18001447
Length = 796
Score = 700 bits (362), Expect = 0.0
Identities = 388/400 (97%), Gaps = 8/400 (2%)
Strand = Plus / Plus
Query: 1 ttcattggtttctcttggtcatctcatgaatctgttgtatttaattacacttgcaatgca 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 ttcattggtttctcttggtcatctcatgaatctgttgtatttaattacacgtgcaatgca 260
Query: 61 ttccaactcgggttcaatcacatattcacagatggtttcattatcttgcatagaatatgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttccaactcgggttcaatcacatattcacagatggtttcattatcttgcatagaatatgt 320
Query: 121 taaa-aaattagtatgaattttcatggccgaatatgtgagatttgtattatctgaagctt 179
|||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 321 taaagaaattagtatgaattttcatggctgaatatgtaagatttgtattatctgaagctt 380
Query: 180 tctggggtttttatctcacaaattggattgaaatggctggaggatttgatgtcttagata 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctggggtttttatctcacaaattggattgaaatggctggaggatttgatgtcttagata 440
Query: 240 ttttgatttta---ttttttaatgaaccatgcattctgtcttttccttgcataacttggg 296
|||||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttga----aggatattttaatgaaccatgcattctgtcttttccttgcataacttggg 496
Query: 297 ttgatcctctgcccaattcctgccaataaactttgttttgatcacagcaatggagaagct 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ttgatcctctgcccaattcctgccaataaactttgttttgatcacagcaatggagaagct 556
Query: 357 aaaactgttaatattttattgtaatacgtttactttttag 396
||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aaaactgttaatattttattgtaatacgtttactttttag 596
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 796
Length adjustment: 9
Effective length of query: 387
Effective length of database: 787
Effective search space: 304569
Effective search space used: 304569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
