Query= MSMg01no451_o18.b1 MSMg01no451_o18.b1 CHROMAT_FILE:
MSMg01no451_o18.b1 PHD_FILE: MSMg01no451_o18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:20 2005
(667 letters)
>mm_chr18_77911246_77912311
Length = 1066
Score = 1089 bits (563), Expect = 0.0
Identities = 582/589 (98%), Gaps = 5/589 (0%)
Strand = Plus / Minus
Query: 81 actcgttgttgagcattattactaagtacaagtacattttcctcaggactaggcaccttg 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1066 actcgttgttgagcattattactaagtacaagtacattttcctcaggactaggcaccttg 1007
Query: 141 ctttattatctagcctctgcacttgagcttatggtgtctgaaatgatacattctttcatt 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 ctttattatctagcctctgcacttgagcttatggtgtctgaaatgatacattctttcatt 947
Query: 201 aaagctttctaattactggtcctcctaaaacagttggtttt-ttttgttttgttttgttt 259
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 946 aaagctttctaattactggtcctcctaaaacagtt-gttttgttttgttttgttttgttt 888
Query: 260 tgttttgttttgttttgtttttctgttttccctgaaatttagtggatgataaactagtta 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887 tgttttgttttgttttgtttttctgttttccctgaaatttagtggatgataaactagtta 828
Query: 320 cccatattgcaccttttttttttttttttaaatcctaccttgtcactagattgtaaagaa 379
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 cccatattgcacc--ttttttttttttttaaatcctaccttgtcactagattgtaaagaa 770
Query: 380 tgctcaaaaactttccccttcaactcccaggctttaaaaagttactcagaaattggcttg 439
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 769 tgctcaaaaactttccccttcatctcccaggctttaaaaagttactcagaaattggcttg 710
Query: 440 tttcagctctcataaataaaagggtctgtagtttattatatgttagcatgtctgttttcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 tttcagctctcataaataaaagggtctgtagtttattatatgttagcatgtctgttttcc 650
Query: 500 ctgtattattgcatctgatactgtgtgctacagaggcaatctttgagatttcatagagga 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 ctgtattattgcatctgatactgtgtgctacagaggcaatctttgagatttcatagagga 590
Query: 560 agaaagatgatatctgaatggttcttaagtgaagaattctcattattgaagagaattata 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 agaaagatgatatctgaatggttcttaagtgaagaattctcattattgaagagaattata 530
Query: 620 t-gactaggaatattttgtaaagtaactgatacttagttggtcatgaca 667
| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tatactaggaatattttgtaaagtaactgatacttagttggtcatgaca 481
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1066
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1056
Effective search space: 693792
Effective search space used: 693792
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no451_o18.g1 MSMg01no451_o18.g1 CHROMAT_FILE:
MSMg01no451_o18.g1 PHD_FILE: MSMg01no451_o18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:20 2005
(676 letters)
>mm_chr18_77749268_77750343
Length = 1076
Score = 1180 bits (610), Expect = 0.0
Identities = 667/698 (95%), Gaps = 22/698 (3%)
Strand = Plus / Plus
Query: 1 tcatcattgggatctctaggacaacacccaggtttgcgctctaccagatgctttcggggg 60
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 179 tcatcatcgggatctctaggacaacacccaggtttgcactctaccagatgctttcggggg 238
Query: 61 ctttttggcatagtaaaatctcaagtcactgccctacctgggagtcctagatggtgctta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 ctttttggcatagtaaaatctcaagtcactgccctacctgggagtcctagatggtgctta 298
Query: 121 gtggcatgcctcctttgagatgtagatcagaggagaaagaacagaagtcagagagacagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gtggcatgcctcctttgagatgtagatcagaggagaaagaacagaagtcagagagacagt 358
Query: 181 ggtctccagaaaatccccaggagctaagcagcaggctcttggttcagtagcaggtgattg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ggtctccagaaaatccccaggagctaagcagcaggctcttggttcagtagcaggtgattg 418
Query: 241 atgacagccattccctaccaa----------ccttgaaatgccacttgagctggaacctg 290
||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 419 atgacagccattccctaccaagtcctaccaaccttgaaatgccacttgagctggaacccg 478
Query: 291 tctctgctccctgtcccccctcccccactcctcttcagatgacttagccagcaagctcag 350
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tctctgctccctgtctcccctcccccactcctcttcagatgacttagccagcaagctcag 538
Query: 351 gccataccactgcatgtttcgaagaacaccgtccagcaccgttggcaactgtctcacc-g 409
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 539 gccataccactgcatgttttgaagaacaccgtccagcaccgttggcaactgtctcacctg 598
Query: 410 g--ca---------ctccccctgagctcccgaggctggatctgagacactccttctggtc 458
| || ||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 599 ggtcagcctcatgactccccctgagctcctgaggctggatctgaggcactccttctggtc 658
Query: 459 tagaaggagtaggtcctatcagcagcctcggagagtctcagggaacctaacagacacttg 518
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 659 tagaaggagtaggtcctatcagcagcctcggagaggctcagggaacctaacagacacttg 718
Query: 519 acagccatatctgggctggtatttgttcttcttaactccctgcttgcttctttcctttgc 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 acagccatatctgggctggtatttgttcttcttaactccctgcttgcttctttcctttgc 778
Query: 579 aatctcactatgaccacacccatgtgcacattcccacctcactatgatcacacctacaca 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 aatctcactatgaccacacccatgtgcacattcccacctcactatgatcacacctacaca 838
Query: 639 cacacacatatccacacaaatctatacacacactccct 676
|||||||||||||||||||| |||||||||||||||||
Sbjct: 839 cacacacatatccacacaaacctatacacacactccct 876
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space: 709956
Effective search space used: 709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
