BAC Information

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BAC

Clone NameMSMg01-452A05
Chromosome18 (Build37)
Map Location 14,854,905 - 14,855,551
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp521, LOC100040094, LOC100040103, LOC100040391, LOC382096, LOC100040129, EG623867, Ss18, LOC100040446
Downstream genePsma8, Taf4b, LOC669965, Kctd1, EG622268, LOC100040151, Aqp4, LOC665473, Chst9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452A05.T7 (MSMg01no452_a05.b1)MSMg01-452A05.TJ (MSMg01no452_a05.g1)
ACCAG539367AG539368
length752755
length of high quality
(start - end)
638 (47 - 684)647 (80 - 726)
definitionCHROMAT_FILE: MSMg01no452_a05.b1 PHD_FILE: MSMg01no452_a05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:27 2005CHROMAT_FILE: MSMg01no452_a05.g1 PHD_FILE: MSMg01no452_a05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACTTAGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCAACTGAGGAATATGGAAGGGATGAGAAGCACCTGAAAAAACG
TTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT
TCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC
AGATGCTGGCCAGGATGTGGAGAAAGAGGAATACTACTCCATTGCTGGTG
GGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCA
GAAAATTGGACATAGTTCTACCGAAAGATCCAGCAATACCACTCATGGGC
ATATACCCAAAAGATGCTCCAACATGTTATAAGGACACATGCTCTACTAT
GTTCACAGCACTCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGAT
GTTCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACATAATG
GAGTACTACACAGCTATCAAAAACAATGAATTTGTGGGGGGAGGGTATAA
GGGATTTTGGGATAGCATTTGAATTGTAAAATGAAGAAAATATCTAATAA
AAAATTGTTAAAAAGGAAATCAGAAAAAGAAGAANAAAAACAATGAATTT
ATGAAATTCTTAGACAAATGGTTGGATCTAAAGGATATCACCCTAGTAAC
CCAATCATCAAAGAACACACACGATATGCACTTACTGATTAGCGGATATT
AG
CCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGTCAATATAGAAATCTGTG
GAGAGCCATGAGCAATCGCCATCTTGAGCCTCCACTGTGCCTAACTGGTA
AACAAGTAATGTGCGCAGGTGCAAGAGTAAATTCGTGCCAAGTCACTGCC
CATCCCGGGGCATAGTAGTGGGGTGATGAGTGAGCAGCTAATCAGGAGCT
GACACGTCACAGGGAGGGGTATATAGGCGGCACCATTTTCCTTGTTCGGG
GTCTTCCTTCAGATGAAGCAATAAAGTTTTGCCATAGAAGAATCCGGTTG
TCCGAGTGAATTCTTGCTGGCGAGATACTAGCTCAGGATAGAAATCAGCT
GGTAACCTCTTATATTTTTGTATTCAGATGGTTTTAAAGAGTTTCTCATT
GCATTTCATACAAGTTTACATTTGTTTAAGTGTAAATTTTATTATGAGTC
GTATGAATGGTTTTTTCCTAATTATTAAGTTGATTCTTCTGTAAGTGTGG
AATATTACAAATGAAGCACCTGCATCACTCTGATCAGTTTTGTAAGTTTT
AACGCTTCTAGGCACATCTTTAGGTGTCTCTATACTTTGTGTGCCTGTAC
TTTTAAAGGTTTTGTACATTTACTATCGTCTACCCACTCCTGCCTGCAGC
TCAATGTTGACCACTTTTTTCTTTGTCTCTGTGAGCCATTTTAACTCTAT
TCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_a05.g1 MSMg01no452_a05.g1 CHROMAT_FILE:
MSMg01no452_a05.g1 PHD_FILE: MSMg01no452_a05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:27 2005
         (647 letters)



>mm_chr18_14854705_14855751
          Length = 1047

 Score = 1220 bits (631), Expect = 0.0
 Identities = 643/647 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgtcaatatagaaatctgtggagagccatgagcaatcgccatcttgagcctccactgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgtcaatatagaaatctgtggagagccatgagcaatcgccatcttgagcctccactgtg 260

                                                                       
Query: 61  cctaactggtaaacaagtaatgtgcgcaggtgcaagagtaaattcgtgccaagtcactgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctaactggtaaacaagtaatgtgcgcaggtgcaagagtaaattcgtgccaagtcactgc 320

                                                                       
Query: 121 ccatcccggggcatagtagtggggtgatgagtgagcagctaatcaggagctgacacgtca 180
           |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccatcccggggcgtagtagtgggatgatgagtgagcagctaatcaggagctgacacgtca 380

                                                                       
Query: 181 cagggaggggtatataggcggcaccattttccttgttcggggtcttccttcagatgaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagggaggggtatataggcggcaccattttccttgttcggggtcttccttcagatgaagc 440

                                                                       
Query: 241 aataaagttttgccatagaagaatccggttgtccgagtgaattcttgctggcgagatact 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aataaagttttgccgtagaagaatccggttgtccgagtgaattcttgctggcgagatact 500

                                                                       
Query: 301 agctcaggatagaaatcagctggtaacctcttatatttttgtattcagatggttttaaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agctcaggatagaaatcagctggtaacctcttatatttttgtattcagatggttttaaag 560

                                                                       
Query: 361 agtttctcattgcatttcatacaagtttacatttgtttaagtgtaaattttattatgagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtttctcattgcatttcatacaagtttacatttgtttaagtgtaaattttattatgagt 620

                                                                       
Query: 421 cgtatgaatggttttttcctaattattaagttgattcttctgtaagtgtggaatattaca 480
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggtatgaatggttttttcctaattattaagttgattcttctgtaagtgtggaatattaca 680

                                                                       
Query: 481 aatgaagcacctgcatcactctgatcagttttgtaagttttaacgcttctaggcacatct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aatgaagcacctgcatcactctgatcagttttgtaagttttaacgcttctaggcacatct 740

                                                                       
Query: 541 ttaggtgtctctatactttgtgtgcctgtacttttaaaggttttgtacatttactatcgt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttaggtgtctctatactttgtgtgcctgtacttttaaaggttttgtacatttactatcgt 800

                                                          
Query: 601 ctacccactcctgcctgcagctcaatgttgaccacttttttctttgt 647
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctacccactcctgcctgcagctcaatgttgaccacttttttctttgt 847


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)