BAC Information

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BAC

Clone NameMSMg01-452P16
Chromosome18 (Build37)
Map Location 42,667,720 - 42,848,544
singlet/doubletdoublet
Overlap geneLOC100042027, Tcerg1, Gpr151, LOC100042037, Ppp2r2b
Upstream geneLOC100041988, LOC100041997, Prelid2, Gm851, Sh3rf2, EG435561, Plac8l1, LOC433177, Lars, EG625929, LOC100042757, Rbm27, Pou4f3, LOC100042767
Downstream geneLOC100042046, LOC100042051, EG666594, Stk32a, Dpysl3, LOC100042074, LOC100042807, Jakmip2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452P16.T7 (MSMg01no452_p16.b1)MSMg01-452P16.TJ (MSMg01no452_p16.g1)
ACCAG540103AG540104
length759759
length of high quality
(start - end)		591 (87 - 677)684 (74 - 757)
definitionCHROMAT_FILE: MSMg01no452_p16.b1 PHD_FILE: MSMg01no452_p16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:42 2005CHROMAT_FILE: MSMg01no452_p16.g1 PHD_FILE: MSMg01no452_p16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,667,720 - 42,668,310)(42,847,928 - 42,848,544)
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCG
GAATTCTTTCCTGTGGTCACAACAGCTTGCTTAGAGTGGATTCCTGTGTT
GGTTTTAAGACTATAACCTGTACGGACTGAAAGTGTGTGAGGTGGGTGTG
GGTGACTATCACGCACATACTGCTTCATGCTCTTCCTAACAAGGGCATGT
TCCAGAAGCTACCTGCAGACTAACTATACCGTTAAAGAGACATGTGTTGG
TCAGCGGGGATGCTTAACATCTATCATCTCAACACTTGAGAGCCTGAGGC
AGGGGGATCACTGCAGAATCTGATGACGGCCTAAACAATGTAGTGAGTCT
ATAGCTATCCTGGGCAACAGAATGAGACCACGTCCCAACACAAAACTCCC
CAAAAGTTTACAACAAAAAGGTGCCATTGCTACATAATGATTGAGTTGTC
TTGTAGTTTCAGGTCTGAAGGAGACCATCAAGGGGAAGTAAGACTTTCTT
GTATTAAATTTCACAATTAGGTTATAAGCCAAATGAAGTTACCAGTCTAG
GTAAGTACTGCCACATCTTCTAATTCTTTCCAAACAGTTCCACCAACTGG
GGGCCAGGCTTCCAAGTATATGAGCCTGTGGGGGCCATATTCATTCAGAT
CACTTCAAGACCACATTCTGGCTTCACAGTAAGCCTATTTATCTGTGGAG
CCATCTCACTGGCCCCACGTGCACATATATTTAATCTATTAAAGTGGAGG
ATACAGGAT

CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTTTGAAATGTCTGGCTAGAGTGGGC
CTAGCTGGCTTCTTAGCTGTCGCTATAGAGGGGCAAACATTCTTGAGTGA
TCTCATGGGCAAGATTCAGTTTGTCTTCTAGATGCCACAGAAGATGAAAC
TAAGATAAGGAGCCAGGAAACATAAATTCATTGAGACAGGGTTTCACAGC
GTGGCCCAGGCTGGACTTGAACTTACAGCAACCCTCCTGCCTCAGCTTCC
TGTGTTTCGTAATTAGAGTCATGAGCCACCACACCCATCTTAGACCTAAG
TTTTAATTCTACCTCTGACTACCAAGCAATCCCTTTTCTTAAAGCCCCTG
AGCCCCGGCTGCCAGAAACCACTACTGCCTGTTCTTCTGCCAACAGCTTG
CCAATTAGACCCCTGTGTGTGTAGTAAAGGCTTGCATAGCACTCACAGCA
AGAGCTGCTAATACCCTAAGTTCTGCTCCTATCTCCTGGTCCTTCCTTGA
CTCCTCTGTGCCAGATATCGTGGACATCAAGCCAGCCAACATGGAGGAGC
TCACAGAGGTGATCACTGCAGCTGAGTTCCACCCCCACCACTGCAACACC
TTCGTATACAGCAGCAGCAAGGGGACAATCCGACTGTGTGACATGCGTGC
ATCTGCGCTGTGTGACAGGCACACCAAGTGTGAGTACCACCACGAGGGCC
ATGGGGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_p16.b1 MSMg01no452_p16.b1 CHROMAT_FILE:
MSMg01no452_p16.b1 PHD_FILE: MSMg01no452_p16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:42 2005
         (591 letters)



>mm_chr18_42667520_42668510
          Length = 991

 Score = 1042 bits (539), Expect = 0.0
 Identities = 578/591 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggattcctgtgttggttttaagactataacctgtacggactgaaagtgtgtgaggtggg 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 tggattcctgtgttggttttaagactacaacctgtacggactgaaagtgtgtgaggtggg 260

                                                                       
Query: 61  tgtgggtgactatcacgcacatactgcttcatgctcttcctaacaagggcatgttccaga 120
           ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 tgtaggtgactatcacgcacatactgcttcatactcttcctaacaagggcatgttccaga 320

                                                                       
Query: 121 agctacctgcagactaactataccgttaaagagacatgtgttggtcagcggggatgctta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 agctacctgcagactaactataccgttaaagagacatgtgttggtcagcgggggtgctta 380

                                                                       
Query: 181 acatctatcatctcaacacttgagagcctgaggcagggggatcactgcagaatctgatga 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatctatcatctcaacacttgaaagcctgaggcagggggatcactgcagaatctgatga 440

                                                                       
Query: 241 cggcctaaacaatgtagtgagtctatagctatcctgggcaacagaatgagaccacgtccc 300
           ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 441 cggcctaaacaatgtagtgagtctatagctagcctgggcaacagaatgagaccatgtccc 500

                                                                       
Query: 301 aacacaaaactccccaaaagtttacaacaaaaaggtgccattgctacataatgattgagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 501 aacacaaaactccccaaaagtttacaacaaaaaggtgccattgctacataacgattgagt 560

                                                                       
Query: 361 tgtcttgtagtttcaggtctgaaggagaccatcaaggggaagtaagactttcttgtatta 420
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtctcgtagtttcaggtctgaaggagaccatcaaggggaagtaagactttcttgtatta 620

                                                                       
Query: 421 aatttcacaattaggttataagccaaatgaagttaccagtctaggtaagtactgccacat 480
           |||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 621 aattccacaattaggttataagccaattgaagttaccagtctaggaaagtactgccacat 680

                                                                       
Query: 481 cttctaattctttccaaacagttccaccaactgggggccaggcttccaagtatatgagcc 540
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 681 cttctaattctttccaaacagttccaccaactgggggccaggctttcaagtatatgagcc 740

                                                              
Query: 541 tgtgggggccatattcattcagatcacttcaagaccacattctggcttcac 591
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgtgggggccatattcattcagatcacttcaagaccacattctggcttcac 791


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space:   569961
Effective search space used:   569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no452_p16.g1 MSMg01no452_p16.g1 CHROMAT_FILE:
MSMg01no452_p16.g1 PHD_FILE: MSMg01no452_p16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:42 2005
         (684 letters)



>mm_chr18_42847465_42848548
          Length = 1084

 Score = 1147 bits (593), Expect = 0.0
 Identities = 611/617 (99%)
 Strand = Plus / Minus

                                                                        
Query: 68   tcttgagtgatctcatgggcaagattcagtttgtcttctagatgccacagaagatgaaac 127
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1080 tcttgagtgatctcatgggcaagattcagtttgtcttctagatgccacagaagatgaaac 1021

                                                                        
Query: 128  taagataaggagccaggaaacataaattcattgagacagggtttcacagcgtggcccagg 187
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1020 taagataaggagccaggaaacataaattcattgagacagggtttcacagcgtggcctagg 961

                                                                        
Query: 188  ctggacttgaacttacagcaaccctcctgcctcagcttcctgtgtttcgtaattagagtc 247
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 960  ctggtcttgaacttacagcaaccctcctgcctcagcttcctgtgtttcgtaattagagtc 901

                                                                        
Query: 248  atgagccaccacacccatcttagacctaagttttaattctacctctgactaccaagcaat 307
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900  atgagccaccacacccatcttagacctaagttttaattctacctctgactaccaagcaat 841

                                                                        
Query: 308  cccttttcttaaagcccctgagccccggctgccagaaaccactactgcctgttcttctgc 367
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840  cccttttcttaaagcccctgagccccggctgccagaaaccactactgcctgttcttctgc 781

                                                                        
Query: 368  caacagcttgccaattagacccctgtgtgtgtagtaaaggcttgcatagcactcacagca 427
            ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 780  caacagcttgccaattagatccctgtgtgtgtagtaaaggcttgcattgcactcacagca 721

                                                                        
Query: 428  agagctgctaataccctaagttctgctcctatctcctggtccttccttgactcctctgtg 487
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 720  agagctgctaataccctaagttctgcccctatctcctggtccttccttgactcctctgtg 661

                                                                        
Query: 488  ccagatatcgtggacatcaagccagccaacatggaggagctcacagaggtgatcactgca 547
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660  ccagatatcgtggacatcaagccagccaacatggaggagctcacagaggtgatcactgca 601

                                                                        
Query: 548  gctgagttccacccccaccactgcaacaccttcgtatacagcagcagcaaggggacaatc 607
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600  gctgagttccacccccaccactgcaacaccttcgtatacagcagcagcaaggggacaatc 541

                                                                        
Query: 608  cgactgtgtgacatgcgtgcatctgcgctgtgtgacaggcacaccaagtgtgagtaccac 667
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540  cggctgtgtgacatgcgtgcatctgcgctgtgtgacaggcacaccaagtgtgagtaccac 481

                             
Query: 668  cacgagggccatggggg 684
            |||||||||||||||||
Sbjct: 480  cacgagggccatggggg 464


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space:   723876
Effective search space used:   723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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