Query= MSMg01no453_p16.b1 MSMg01no453_p16.b1 CHROMAT_FILE:
MSMg01no453_p16.b1 PHD_FILE: MSMg01no453_p16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:01 2005
(718 letters)
>mm_chr18_84076567_84077684
Length = 1118
Score = 1357 bits (702), Expect = 0.0
Identities = 711/714 (99%)
Strand = Plus / Plus
Query: 5 gaattcagccagacattgccttttaaatccatgcagcagaaagcttccacagtgtctacc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagccagacattgccttttaaatccatgcagcagaaagcttccacagtgtctacc 264
Query: 65 ttaatcactacgtgcttcttcttgtctctaccaaactgcatctataaaaaccataaagta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttaatcactacgtgcttcttcttgtctctaccaaactgcatctataaaaaccataaagta 324
Query: 125 gaaatctttgattacttggaaaggtcaggcttcaaattgtatatttaatctgtattgaga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaaatctttgattacttggaaaggtcaggcttcaaattgtatatttaatctgtattgaga 384
Query: 185 gaagcgtgttctgggaagagttacgttgtagtgtctaaacacctgctgcttccatttttt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaagcgtgttctgggaagagttacgttgtagtgtctaaacacctgctgcttccatttttt 444
Query: 245 caagacacacatgggcactcctgggcacagacccacaaataacatagctatgcctatcac 304
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caagacacgcatgggcactcctgggcacagacccacaaataacatagctatgcctatcat 504
Query: 305 cagctacctcccttctcagatgctccttttagaatttaaatatttcagcacctgtcagaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cagctacctcccttctcagatgctccttttagaatttaaatatttcagcacctgtcagaa 564
Query: 365 gacaggtgattttttttttcatggtcagcagaaataacaacaatataaataagctatttc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gacaggtgattttttttttcatggtcagcagaaataacaacaatataaataagctatttc 624
Query: 425 cacctgcctggagtgacttgggaagcaggccatcccaagattggatattctgaaaatgtc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cacctgcctggagtgacttgggaagcaggccatcccaagattggatattctgaaaatgtc 684
Query: 485 tgcttcctagccttccattttcttttcaacctttctccttctcctcttctgctttccttt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgcttcctagccttccattttcttttcaacctttctccttctcctcttctgctttccttt 744
Query: 545 cagacaattctattaggctgctgctcagtaagtgcagggagcggcagccagagcaggtgg 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cagacaattctattaggctgctgctcagtaagtgcagggagcggcagccagagcaggtgg 804
Query: 605 ccagctgccatctaggaggatatcaggaatgtgtaggagcagcaggttgggtacagggga 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ccagctgccatctaggaggatatcaggaatgtgtaggagcagcaggttgggtacagggga 864
Query: 665 gcttcttgtgagggggttggcaaaggggacgccagctgtgcaagcttcatcctg 718
||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 865 gcttcttgtgaggggtttggcaaaggggacgccagctgtgcaagcttcatcctg 918
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 718
Length of database: 1118
Length adjustment: 10
Effective length of query: 708
Effective length of database: 1108
Effective search space: 784464
Effective search space used: 784464
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no453_p16.g1 MSMg01no453_p16.g1 CHROMAT_FILE:
MSMg01no453_p16.g1 PHD_FILE: MSMg01no453_p16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:01 2005
(675 letters)
>mm_chr18_84255783_84256858
Length = 1076
Score = 1290 bits (667), Expect = 0.0
Identities = 673/675 (99%), Gaps = 1/675 (0%)
Strand = Plus / Minus
Query: 1 ccagggagcagaagcattttaaagttctaggtggggtccgcagaggggctcagcggaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 ccagggagcagaagcattttaaagttctaggtggggtccgcagaggggctcagcggaatt 816
Query: 61 ggagactttgtgatgatctttgaagacttcgttttctcacgcatctggaaagatctttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ggagactttgtgatgatctttgaagacttcgttttctcacgcatctggaaagatctttct 756
Query: 121 atcttgccaatttttagctaattgtgttcactgaccaaatgactgaccaaattattcacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 atcttgccaatttttagctaattgtgttcactgaccaaatgactgaccaaattattcacc 696
Query: 181 ctttaaaatagggtcaacattaaatatttccgaacatttttgtgatgagctgtccatctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ctttaaaatagggtcaacattaaatatttccgaacatttttgtgatgagctgtccatctt 636
Query: 241 tatattttaggtgtttgttttaatttaaaaatgtctcctgttttccacttaacctctgag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 tatattttaggtgtttgttttaatttaaaaatgtctcctgttttccacttaacctctgag 576
Query: 301 ttgcagaaatacaaaagccacactgtccctcaccgatcaaatctaaccccccagactaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 ttgcagaaatacaaaagccacactgtccctcaccgatcaaatctaaccccccagactaag 516
Query: 361 ggtgcaaaagtgaaacaggtattttttcctctcaaatgtaggacgtatttcacccaagag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ggtgcaaaagtgaaacaggtattttttcctctcaaatgtaggacgtatttcacccaagag 456
Query: 421 tggttcagatccacgtgggcgcgtgtgtatgcatgtacacgcgggggaggggaactaaca 480
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tggttcagatccacgtgggcgtgtgtgtatgcatgtacacgcgggggaggggaactaaca 396
Query: 481 ggtttaagaatcgcaggaactgatgtctgcctaactagactcaggactcatgggttccgc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ggtttaagaatcgcaggaactgatgtctgcctaactagactcaggactcatgggttccgc 336
Query: 541 ccgagatcagccagtgcattacaacacagccccctgaacgtcttcctgcaacgtgcaatc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ccgagatcagccagtgcattacaacacagccccctgaacgtcttcctgcaacgtgcaatc 276
Query: 601 ttttatgttatgctgtattaagatttcttttctgtgtcatattgtttagctccgaaaaaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ttttatgttatgctgtattaagatttcttttctgtgtcatattgtttagctccgaaaaaa 216
Query: 661 aa-taaaagaaaaca 674
|| ||||||||||||
Sbjct: 215 aaataaaagaaaaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1076
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1066
Effective search space: 708890
Effective search space used: 708890
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
