BAC Information

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BAC

Clone NameMSMg01-455J08
Chromosome18 (Build37)
Map Location 7,580,187 - 7,580,653
singlet/doubletsinglet
Overlap geneMpp7
Upstream gene4921524L21Rik, LOC100039583, EG665053, Rab18, LOC620787, LOC100039635, Mkx, LOC664778, Armc4
Downstream geneEG622384, LOC100039562, LOC100039606, Wac, LOC665121, LOC225134, LOC665132, EG433158
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455J08.T7 (MSMg01no455_j08.b1)MSMg01-455J08.TJ (MSMg01no455_j08.g1)
ACCAG542089AG542090
length725737
length of high quality
(start - end)
503 (71 - 573)466 (74 - 539)
definitionCHROMAT_FILE: MSMg01no455_j08.b1 PHD_FILE: MSMg01no455_j08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:08 2005CHROMAT_FILE: MSMg01no455_j08.g1 PHD_FILE: MSMg01no455_j08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGATCC
GCGGAATTCTCTTTGCAGAATACCGAATGGCAGAGAAGCACCTGAAAAAA
TGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAG
ATTCCACCTCAAACCAGTCAGAATGGGTAAGATCAAAAATTCAGGTGACA
GCAGATGCTGGTGAGGATGTGGAGAAAGAGAAACACTCCTCCGTTGTTGG
TGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCT
CAGAAAACTGGACATATTATTAATGGAGGATCCCACAATACCTCTCCTGG
GCATATATCCAGAAGATGTTCCAACTGGTAAGAAGGACACATGATCCACT
ATGTTCATAGCAGCCTTATTTATAATAGCCACAAGCTGGAAAGAACCCAT
ATGTCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACAATA
TAGTACTACTCAGGTAGTAAAACAAATGAATTTATGAAATTCCTAGGCAA
ATGGATGGACCTGGAGGGCATCATCCTGATTGAGGCAACACATTCACAAA
AAAACTCACATGATATGTTCTCACTGATAAGTGCAAATTAGTCCAGAAAC
TTACAAAACCCAAGATATTTGGACCATTTGCAAAAATCATGATACTCCTT
AAGAATGAACACCAATGTGTGGCCC
CCCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTGCCCAGAGGAATTCTGGGGGAGAGGGAGGGCAAAGGA
GACAAAGTGGGGGAACACTATCAAACAATTTAAAATTAAAAATAAACACA
AAAAACTTGATAATATACCAAAATTCTCTGCTATTAGACTCTGACCCACC
AGTCTAACTGTAAAGAATTTACCCTTAGAATTGAGCCGACAACAAGAAGA
CAACAGAGCCACACCAGACTGCAATAGAACTTTCCAGTTTAAGGACAGTG
CTTTGGTCAAAAGTGTTTTTTCCTCCCCACATCTGACACACTTTGGCTTT
TCCTGTGCTCTAAGCTAGTTCCTCCTTCCAGCTCAGGTCTGGTTTTACAG
GATCAAAGAGGGTCTAATAATTAAGTTGCCCCATTTTAGAAGTGACCTTG
ACTTTGATATTGTCCAACCCCATTTCACTTGACTTAACACATATACTGCT
TAAGATTATGAGACAAAGATGAAATTCCTGGTGATGGCATGGACTGTGAC
AGAGGCCTAGCAGGCAATATCAGACTACAAAGTTCTCATCATCTTAAAAC
CAACTCCTTTTCTAAAATGCTCATGTATGGCATACCTATTTTACTCTTGC
CATTAATGTTCAACTTTCAGAACCTCCAGTTGCCTATAATAATATCCCTC
CTCTGCAACCAGGAAACTATACACTTTGGATCCCAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_j08.g1 MSMg01no455_j08.g1 CHROMAT_FILE:
MSMg01no455_j08.g1 PHD_FILE: MSMg01no455_j08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:08 2005
         (466 letters)



>mm_chr18_7579987_7580853
          Length = 867

 Score =  795 bits (411), Expect = 0.0
 Identities = 453/467 (97%), Gaps = 1/467 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctgggggagagggagggcaaaggagacaaagtgggggaacactatcaaacaatttaa 60
           ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 attctgggggagaaggagggcaaaggagacaaagtggggaaacactatcaaacaatttaa 260

                                                                       
Query: 61  aattaaaaataaacacaaaaaa-cttgataatataccaaaattctctgctattagactct 119
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattaaaaataaacacaaaaaaacttgataatataccaaaattctctgctattagactct 320

                                                                       
Query: 120 gacccaccagtctaactgtaaagaatttacccttagaattgagccgacaacaagaagaca 179
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 gacccaccagtctaactgtaaagaatttacccttagaattaagccgacaacaagaagaca 380

                                                                       
Query: 180 acagagccacaccagactgcaatagaactttccagtttaaggacagtgctttggtcaaaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagagccacaccagactgcaatagaactttccagtttaaggacagtgctttggtcaaaa 440

                                                                       
Query: 240 gtgttttttcctccccacatctgacacactttggcttttcctgtgctctaagctagttcc 299
           |||  ||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgacttcccctccccacatctgacacactttggcttttcctgtgctctaagctagttcc 500

                                                                       
Query: 300 tccttccagctcaggtctggttttacaggatcaaagagggtctaataattaagttgcccc 359
           ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 tccttccagctcaggtccggttttacaggatcaaagaggggctaataattaagttgcccc 560

                                                                       
Query: 360 attttagaagtgaccttgactttgatattgtccaaccccatttcacttgacttaacacat 419
           ||||| |||||||||||||||||||||||||||||| |||||||||| |||||| |||||
Sbjct: 561 atttttgaagtgaccttgactttgatattgtccaactccatttcactcgacttagcacat 620

                                                          
Query: 420 atactgcttaagattatgagacaaagatgaaattcctggtgatggca 466
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atactgcttaagattatgagacaaagatgaaattcctggtgatggca 667


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 867
Length adjustment: 10
Effective length of query: 456
Effective length of database: 857
Effective search space:   390792
Effective search space used:   390792
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)