BAC Information

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BAC

Clone NameMSMg01-456J07
Chromosome18 (Build37)
Map Location 89,659,122 - 89,659,579
singlet/doubletsinglet
Overlap geneDok6
Upstream geneLOC665497, LOC100040003, LOC623208, Socs6, Rttn, Cd226
Downstream geneLOC383320, LOC620693, Eif3s6-ps2, LOC665526
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456J07.T7 (MSMg01no456_j07.b1)MSMg01-456J07.TJ (MSMg01no456_j07.g1)
ACCAG542849AG542850
length734811
length of high quality
(start - end)
458 (67 - 524)213 (77 - 289)
definitionCHROMAT_FILE: MSMg01no456_j07.b1 PHD_FILE: MSMg01no456_j07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:27 2005CHROMAT_FILE: MSMg01no456_j07.g1 PHD_FILE: MSMg01no456_j07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTGTTGCTTTCTTTTTATAGTTCATGTTTTTAGTGCTGTATG
TATGACAGAGTTGTTTTGAATTGTACCCATCTTAAATTAATGGTTGAGTA
TGCTATGAACTAGAGAGTATGATTTTGCTATCTGAAAAAAGGAAACTCTT
CCTGGGAATCCCACTACAGAGCAAAGTACAGACAACACAAAATTCCAATG
TGGTGAACCAATGAAATTTATCATGGTTACTTACAGAAATGTGGGTAAAA
GGTTACTTACAGGAGCATAAATGAACCAAAGCTCACCCCACTACAGGTTC
TGGAAACCAGGAACATACTTCATAACTTGCATACAGATCAACAGGTTGGA
GAGTATCTTTCCAAATGACTCAGTTGATCTAAACCTCTTCCATTCTACTG
GACTGGTCTGGGAGTCTTCGTTGAAGCTGACATCACTGTCTGAGGGGAAC
GTCCAGCTTTTATTACTTACTCTGGCATGGAGGGCACTAAGTGAATCTCT
ATTTAAGTTTAGTTGTTTACCTTCCTGCTTAAGGAACTTCCCTGCCAGGA
TGGAAACTACCCATCTCAAGGAAACTATGGCGCAACAGATTCCTATGGAT
TCCCAACCCTGTATGGCCATCCTTCCTAGAAAACTTTAAATTCCTTAAAT
TTTCTTAGGGTAACCAATAAAACGGGTTTATTGT
TTCGATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGCTTTGCTCTGTATTCCATTT
TTAAATTGGGTTATTTGGGTTGTCTAACTTGTTGAGTTCTCTATATATTT
TGGATATTAGCCCTCTGTCAGATGTACAGTTGGTGAAGATATTTTTCCAA
TCTGTAAGCTGACATTTTGTCCTTTTGACAGTGTCCTTTGCCTTATAGAA
GCTTTACAGTTTCATGATGTCCAATCTATTATTTGTTTATTTTAGAGCCT
GTTTACAACATAAATCCTCTCCCATTTATATGTGGCATGTCTTTCAACTT
TTATGAAACTGTTTATTTCCTGAAATCTTAGATACGAGATTATTTATATG
TGGTTGTATATTTGTATTGCTATTAATCCTGACTATTTCGGTTTCGTTTC
CCGTTATCACCTTTTATTTCTTAACCTATCCTTTGTTTTTGCCACTTTCA
TTGACCGTTCCTACTAACTTTTCTCTCTGTTTTTAACTTCTCTTTATTTT
TTTCAATTTGTCCTTCTTTTTTTTTCCCTCTCCCCCGCTCCTCTTTTTTC
CCCCCTTTTTTTTCCGTCCGTCTTTTTTTACATCACTTTTTTTTTCTTCT
TTTACCTCACCTTCTTTTCTTCCCATTATTTCCTTCTTTTATTCCTTTAT
TACCTTTTTTTCTTATTCCCCTCCTTCTTTCTTTTTCTCCGTTTCTCTTT
CTTTTTTCTTTTTTCTTTTTTCCTCACTCCTTTTTTTCTTTACCTTCTCC
TATTTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_j07.b1 MSMg01no456_j07.b1 CHROMAT_FILE:
MSMg01no456_j07.b1 PHD_FILE: MSMg01no456_j07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:27 2005
         (458 letters)



>mm_chr18_89658922_89659779
          Length = 858

 Score =  855 bits (442), Expect = 0.0
 Identities = 454/458 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctttttatagttcatgtttttagtgctgtatgtatgacagagttgttttgaattgtac 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 ttctttttatagttcatgtttttagtgctgcatgtatgacagagttgttttgaattgtac 260

                                                                       
Query: 61  ccatcttaaattaatggttgagtatgctatgaactagagagtatgattttgctatctgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccatcttaaattaatggttgagtatgctatgaactagagagtatgattttgctatctgaa 320

                                                                       
Query: 121 aaaaggaaactcttcctgggaatcccactacagagcaaagtacagacaacacaaaattcc 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 aaaaggaaactcttcctgggaatcccactacagagcaaagtacagagaacacaaaattcc 380

                                                                       
Query: 181 aatgtggtgaaccaatgaaatttatcatggttacttacagaaatgtgggtaaaaggttac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgtggtgaaccaatgaaatttatcatggttacttacagaaatgtgggtaaaaggttac 440

                                                                       
Query: 241 ttacaggagcataaatgaaccaaagctcaccccactacaggttctggaaaccaggaacat 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttacaggagcagaaatgaaccaaagctcaccccactacaggttctggaaaccaggaacat 500

                                                                       
Query: 301 acttcataacttgcatacagatcaacaggttggagagtatctttccaaatgactcagttg 360
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acttcataacttgcacacagatcaacaggttggagagtatctttccaaatgactcagttg 560

                                                                       
Query: 361 atctaaacctcttccattctactggactggtctgggagtcttcgttgaagctgacatcac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atctaaacctcttccattctactggactggtctgggagtcttcgttgaagctgacatcac 620

                                                 
Query: 421 tgtctgaggggaacgtccagcttttattacttactctg 458
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtctgaggggaacgtccagcttttattacttactctg 658


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space:   379904
Effective search space used:   379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)