BAC Information

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BAC

Clone NameMSMg01-456K07
Chromosome18 (Build37)
Map Location 78,307,779 - 78,307,929
singlet/doubletsinglet
Overlap geneSlc14a1
Upstream genePias2, EG639653, St8sia5, Loxhd1, Rnf165, 8030462N17Rik, 4930465K10Rik, Ccdc5, Atp5a1, Pstpip2, 5430411K18Rik, Cd33l3
Downstream geneSlc14a2, EG620155, Setbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456K07.T7 (MSMg01no456_k07.b1)MSMg01-456K07.TJ (MSMg01no456_k07.g1)
ACCAG542897AG542898
length779821
length of high quality
(start - end)
239 (73 - 311)154 (130 - 283)
definitionCHROMAT_FILE: MSMg01no456_k07.b1 PHD_FILE: MSMg01no456_k07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:32 2005CHROMAT_FILE: MSMg01no456_k07.g1 PHD_FILE: MSMg01no456_k07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXAATCAATAGAGGATCCG
CGGAATTCTTTGGTTCGCTCAGAGCTCCATTTTTAATGGGGTTATTTGAT
TTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTAGATATTAGTCC
CCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCC
TTTTTGTCTTATTGATAGTGTCTTTTGCCTTGCAGAAGCTTTGCAATTTT
ATGAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGT
TCTATTCAGGAATTTTGTTCTTGTACCCATATCTTCGAGGCTTTTCCCTA
CTTTCTCTTCTATAAGTTTCAGTGTCTCTGGGTGACCTTTATCAGCACCA
GAGGCTATAGTACCCCCCACAGACTATAGGATCATTTGTCCTTATGCTAC
TGCCTTTTCCCTCTCTGACAGTTGATGCTAGTCTTTATCTATTGTTTTCT
AGCACGACCCTTTAGCTCCCCATTTTTTCCCCGTGCTCCGCTTTCCCCCT
CTTTCCTTTAATCGTCCCCTTCCCACGGTTGGTTTTTCCCCCCCCTTCTT
CCTTTTTTTTTGTTCTTTCCTGCCCTTTTTTTTCTTGTCCTTTTCTTTTC
GTCCCTTATTTATACCTCTTATTTTTCTTGTCGCTCTCTCCGTTTCTCGC
TTCTCTCTTCCTCTTAATCCTTTTCTCCATTTTACCTTTCTCTTTTTTTT
CCTCTCTCTTTTTTTTTTTCTCTTCTCTC
TCGATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGCCTAGGAGAAGCGGGCTTTTGAAAG
CACACACTCTCTCTATGTTTATCTGTGAGGATATGCATCGTATCTACACC
CTGAGACTCAGCGGATCTCACGCTCTGTCCTCCAGTACAGTTTGGAGGAG
TTTGTTGAAACAGGTTCCCAGGCCCCGCTACACCTTGAGAACTCTGAGTT
ACTGTTTGTATTCTGGACTGAGCCAGAACAGCAGGTTCTGCATAGCCCAA
AAAGTACAACATCCTGTTTTGTCTTTTTGATGTAGATCTCGAAAGCTCTA
ACCCTTTTTATTTACCTCCCTCCTGGAGGTGCTTCTTACCCTCCCTTTCT
TGTGTTTGATTTTTCCTTCCCCCCCTTATTTCTGTGTGCCTTTTTTACCT
ATTACTTTGTTTTTTCTCCTCATCTTCTTTTTTTCGTCTCTTTTTTCTTC
TATTCTCGTTCCCCTCTTCCTTTTTTTCCTCTTTATTCTTTTTCTTTCTC
CTTTTCTTTTCCTCTTCTCTTCTTTCTCTTCTCTAGATTTTACTTTTTTC
TCACCTTTGTACCTCTTCCTCTATTCTCATCTTATCTCCCTTTTCATTCT
TCTTTCATTTCTTTTTTTCTCTTCTTTTTCTTACGTGTTATTTTTTTTTC
TTTCCTTTTTTACAAACTAACTCCTTTTCTCCTTCTGTTTTGTTTTTCCC
TCTCTCACTATCTCACTCTTTTTTTATTCTTGTTTGTCTCTCCCCATCTC
TTCTTATATTTTCCTCATCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_k07.g1 MSMg01no456_k07.g1 CHROMAT_FILE:
MSMg01no456_k07.g1 PHD_FILE: MSMg01no456_k07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:32 2005
         (154 letters)



>mm_chr18_78307576_78308129
          Length = 554

 Score =  261 bits (135), Expect = 1e-74
 Identities = 147/151 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   atgcatcgtatctacaccctgagactcagcggatctcacgctctgtcctccagtacagtt 63
           ||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 204 atgcatcatatctacaccgtgagactcagcggatctcacactctgtcctccagtacagtt 263

                                                                       
Query: 64  tggaggagtttgttgaaacaggttcccaggccccgctacaccttgagaactctgagttac 123
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 264 tggaggagtttgttgaaacaggttcccaggccctgctacaccttgagaactctgagttac 323

                                          
Query: 124 tgtttgtattctggactgagccagaacagca 154
           |||||||||||||||||||||||||||||||
Sbjct: 324 tgtttgtattctggactgagccagaacagca 354


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 154
Length of database: 554
Length adjustment: 8
Effective length of query: 146
Effective length of database: 546
Effective search space:    79716
Effective search space used:    79716
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)