BAC Information

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BAC

Clone NameMSMg01-458F19
Chromosome18 (Build37)
Map Location 4,531,833 - 4,532,403
singlet/doubletsinglet
Overlap geneLOC100039354
Upstream geneLOC100039273, LOC435549, EG664867, LOC621666, Lyzl1, LOC383374, LOC664909, Map3k8, Papd1, EG664931
Downstream geneLOC433157, 9430020K01Rik, LOC268988, Svil, Zfp438
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458F19.T7 (MSMg01no458_f19.b1)MSMg01-458F19.TJ (MSMg01no458_f19.g1)
ACCAG544210AG544211
length820762
length of high quality
(start - end)
174 (49 - 222)574 (75 - 648)
definitionCHROMAT_FILE: MSMg01no458_f19.b1 PHD_FILE: MSMg01no458_f19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:56 2005CHROMAT_FILE: MSMg01no458_f19.g1 PHD_FILE: MSMg01no458_f19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAAACCXXXXXXXXXXXXXXXXXXXXXXXXXXCTATTTTCAGAGATCCG
CGGAATTCTTCTGCTTCCCTACATCACTTCTACCTATGCTAATCTACTGA
GAGCATGTGCATGTGTGTACTCATATGTGTGTGTATGAGTGTGTATGAGC
ATGTATGTCCTTATGTGCATGAGTCTGTGTTTATGGGAGTAGGTGTGTAG
AGGGGTAGGAGTGTGTGTNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTTTTTTTTTTNNTNNTNNTNNTTTTTCTTTTTTTTTTTTTTTTNNT
NTTNNTTTTNNNTNNNNNNNNTTTTTTTTTTTTTTTNNNNNNNNNNNNNN
NNNNNNNTNNNNNNNNNTTTTTTTTTTTCCCTCTCTCTTCCTCTCTTNTC
CTCTTTTTTCTTTCTTTTTTTTTTTTTCCCCCCCCCTTTTTTTTTTTTTT
CTCTTTTCTCCCCCCTCTCTCCTCCTTTCTTTTTTTTTTCCTCTCCCTTT
TTTTCTTCTCTTTCCTCTTTTCTCTTCTCTTCCCTTTTCTTTTTTTCTTT
CTNTCCTTCTTTCTCTCCTTTCTCTTCTTCCTCTTTTCCCCTTTCTTCCT
CCTCTTCCTTCTCTTCTTTTTTCCTCTCCCTCTCTTCTTTTTTTTTTTCT
CCCTCCTTTTCCCCTCTTTCCCCCTCCTTTTTCTTTCCCCTCCTCCTTCC
TTCTCCCTCTTCTTTTTTCTTTCTTTTTTCTTCTTTCTCCTCCCTTTCTC
CTCCCTCTCCCTTTTCTCTCCTCTTCCTCTCTTTCTCCTCTCTCTCTTCT
TCCCTTCCTTCTCTTTCTTC
CATGCAATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTGATCTCCAGTTGGCAGACAGAGA
ACACGAGGAGGAACACAGCTTCTGACCTATTCTCAGGCACAGAACGTTAG
TAGGTTAGAAGAGGGTGCAGCTTTTCTACTCACTAANATATAATCTCTGT
CCAGTCCTTTCAGGTAGCTAAGGCCCTCTTGAGGAAGAAGAGAAGCAGGG
ACCTGGAGGGAACTTGAGTGTGGAAGACATTGAGCACCTGATGGAGGAGG
AAGCCCGCGCAGCACACCTGTTTTAGTCAGGACTGAGACTCTTCACACAG
AACCCAGGCAAACAGTGGGACTTAGGAAGCAGTGCTTAGACCCTGGTGCC
GTGCTTTAGCAGTGAGGATTTCCTTTGTATCCTGAGATGCAATGCTGAGA
ATTTGTGATGAGCAATGAGGAGGGAGCTAAAGTCTCGGTTGTGTTTTGAG
TACCCAGGTTGGGAGCTCACTGAAGAAATTGGGACAGACACTGGATGATA
AGTTCTTCCCTTAACAGATTGAGGCATAAAAAAAAAAGACAAATTTGGAC
ATTGACTAGACAATGTAAAGTTTATATTTACTTATTTATTAAAGATGTAT
TGAATGCCTATGTGCATGTATGTGTGTGTTTGTTTATCTATGCATATATC
AATAGAGGCCAGAGGATATTGGATTCCTTGGAGCTGGGGTTATAGCCAGT
TGTGAGCTACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_f19.g1 MSMg01no458_f19.g1 CHROMAT_FILE:
MSMg01no458_f19.g1 PHD_FILE: MSMg01no458_f19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:56 2005
         (574 letters)



>mm_chr18_4531633_4532603
          Length = 971

 Score =  998 bits (516), Expect = 0.0
 Identities = 559/577 (96%), Gaps = 9/577 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgatctccagttggcagacagagaacacgaggaggaacacagcttctgacctattctc 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 771 attgatctccagttggcagacagagaacacgaggaggaacccagcttctgacctattctc 712

                                                                       
Query: 61  aggcacagaacgttagtaggttagaagagggtgcagcttttctactcactaanatataat 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 711 aggcacagaacgttagtaggttagaagagggtgcagcttttctactcactaaaatataat 652

                                                                       
Query: 121 ctctgtccagtcctttcaggtagctaaggccctcttgaggaagaagagaagcagggacct 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 ctctgtcgagtcctttcaggtagctaaggccctcttgaggaagaagagaagcagggacct 592

                                                                       
Query: 181 ggagggaacttgagtgtggaagacattgagcacctgatggaggaggaagcccgcgcagca 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 591 ggagggaacttgagtgtggaagacattgagcacgtgatggaggaggaagcccgcgcagca 532

                                                                       
Query: 241 cacct---gttttagtcaggactgagactcttcacacagaacccaggcaaacagtgggac 297
           |||||   |    |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 cacctgcag----agtcaggactgagactcttcacacagaacccaggcaaacagtgggac 476

                                                                       
Query: 298 ttaggaagcagtgcttagaccctggtgccgtgctttagcagtgaggatttcctttgtatc 357
           |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 475 ttaggaagcagtgcttagaccctggtgctgtgctttagcagtgaggaattcctttgtatc 416

                                                                       
Query: 358 ctgagatgcaatgctgagaatttgtgatgagcaatgaggagggagctaaagtctcggttg 417
           ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ctgagatgcaatgctgacagtttgtgatgagcaatgaggagggagctaaagtctcggttg 356

                                                                       
Query: 418 tgttttgagtacccaggttgggagctcactgaagaaattgggacagacactggatgataa 477
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 355 tgttttgagtacccaggttgggagctcactgaagaagttgggacagacactggatgataa 296

                                                                       
Query: 478 gttcttcccttaacagattgaggcataaaaaaaaaagacaaatttggacattgactagac 537
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 295 gttcttcccttaacagattgaggcat-aaaaaaaaagacaaatttggacattgactagac 237

                                                
Query: 538 aatgtaaagtttatatttacttatttattaaagatgt 574
           ||||||||||||||| |||||||||||||||||||||
Sbjct: 236 aatgtaaagtttata-ttacttatttattaaagatgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 971
Length adjustment: 10
Effective length of query: 564
Effective length of database: 961
Effective search space:   542004
Effective search space used:   542004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)