BAC Information

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BAC

Clone NameMSMg01-459J17
Chromosome18 (Build37)
Map Location 44,515,865 - 44,516,107
singlet/doubletsinglet
Overlap genenone
Upstream geneDpysl3, LOC100042074, LOC100042807, Jakmip2, Spink3, Scgb3a2, Gm94, Spink5, EG433178, LOC666969, EG433180, Spink12, LOC100042855, 9530002K18Rik, Spink11, Npy6r, Myot
Downstream geneDcp2, Mcc, LOC100042883, Ythdc2, LOC626309, LOC225457, LOC100042900
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459J17.T7 (MSMg01no459_j17.b1)MSMg01-459J17.TJ (MSMg01no459_j17.g1)
ACCAG545159AG545160
length707794
length of high quality
(start - end)
243 (35 - 277)243 (68 - 310)
definitionCHROMAT_FILE: MSMg01no459_j17.b1 PHD_FILE: MSMg01no459_j17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:35 2005CHROMAT_FILE: MSMg01no459_j17.g1 PHD_FILE: MSMg01no459_j17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTTGCGGCGCTAATAGACTCCTATTCGAGAGGACCGCGGAATCTTTGTT
ACCTCTGAGCCCCATTTTTAATGGGGTTATTTGATTTTCTGGAGCCACCT
TCTTGAGTTCTTTATATATATATTGGATATTAGTCCCCTATCTGATTTAG
AAGGAAAGATCCTTTCCAACTCTGTTGGGGCCTTTTTGCTTATTGACAGG
GTCTTTTGCCTTACAGAAGCTTTGCAGTTTTATGAGGTCCCATTTGTNCN
CAAATTCTCGATCTTACAGCACAAGNNNNNCCCNNNATTTTTTTTGGGGC
CCCTTGGGGTTTTTTTCCCCCCTNCNAAATTTTCCATAAAAAATTTTTCC
CCCCTTGTTGACCATATCTTTCACGGGGCGTTTTTTCCCCCTTTTTTCTC
TCCTCTAAAAAATTTCCTCGGGGCCCCTGGGGGTTTTTATGGTGGAGNNN
NTTCTTCCTTCTCCTTCTGTCTCCTCTCCCCTTTCCCCCTTTCTCCCCCN
NCNCTTTCGGNCNNNNCCTGTGCCTTCCCCTTTTTCNNCNNNCAACCTAC
TNGTTCCCCCTTGCNTNATTAAACGCACTATTCTCCCCCTCTTCTCTTCC
CCCTCTTTCTTTTTCTTTCGTCATTATTTAGTNAGGTTCTNTNTTTCCCC
CTTTCTTCTCCCCTTTCCCTTTTACTTTTCCCCGCCGCGCGTAGGCTTTG
TGTCTTN
GCAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTATGGCCGTAAAAGAGGAAACTGAAATGGAAT
TCCGTCCAAAGCTCTCCAGGGTAGTCTAAGCATATCGCTGAGCTGTTTGG
AAGGCAGAAGATAAAGCCACTTTTGTCCCTGCTCTGAAAGAAGTGGAGAG
TGGTATGGATAAATGGTGTTGATGTACAGATATAAAGCAAAACTAGGCCA
CACAGTAGCGAGGGCCAAAAACTGACTTTCATGGAAGGAACAGAAGAGAC
CAAGCAAAGGTTTGTGCCAGTGGACTGGTGGCCCATGGCGAAGAAAACAC
CATTGTTCCAGCTTAAGATAGTTTCCTGAAAGGATTTGTATCTTCCTGGG
CTTGCACTCTCGGGGGCGTCTCAAAATTAGACTGTCTAAAATAGCTTGGA
TATTCGACTTTGTAAACACTATGATGCTTCCCTTCCCCCCCCCGCCTCGA
CTTTTCTCCTCCCTCCCCCCCACTTTTACTGAACTCTTGTCTTTCGCTTC
TTTTTTCTTCTCTTTTTTGTCAACCCTTGGTACGTGTTCTTTCTTTCCCT
CTCCTTCCTTCCCCTTCCCCCTCTTCCCTCGAATATTTATTTTTCACTTT
CTCTCCACTACTCTTATCTTCTTTTTACTCCGCCCTTATATCTTTTCTTC
CCTCTATTTTAACACCCCTTTTCTTCTCTACTTCTATTTTCAGTCCTCCT
CTGTTTTTATAACTTCCCCCCCCCTTTTCCCTCATTAACCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_j17.g1 MSMg01no459_j17.g1 CHROMAT_FILE:
MSMg01no459_j17.g1 PHD_FILE: MSMg01no459_j17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:35 2005
         (243 letters)



>mm_chr18_44515665_44516307
          Length = 643

 Score =  470 bits (243), Expect = e-137
 Identities = 243/243 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttatggccgtaaaagaggaaactgaaatggaattccgtccaaagctctccagggtagtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttatggccgtaaaagaggaaactgaaatggaattccgtccaaagctctccagggtagtct 384

                                                                       
Query: 61  aagcatatcgctgagctgtttggaaggcagaagataaagccacttttgtccctgctctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aagcatatcgctgagctgtttggaaggcagaagataaagccacttttgtccctgctctga 324

                                                                       
Query: 121 aagaagtggagagtggtatggataaatggtgttgatgtacagatataaagcaaaactagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aagaagtggagagtggtatggataaatggtgttgatgtacagatataaagcaaaactagg 264

                                                                       
Query: 181 ccacacagtagcgagggccaaaaactgactttcatggaaggaacagaagagaccaagcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ccacacagtagcgagggccaaaaactgactttcatggaaggaacagaagagaccaagcaa 204

              
Query: 241 agg 243
           |||
Sbjct: 203 agg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)