BAC Information

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BAC

Clone NameMSMg01-461A05
Chromosome18 (Build37)
Map Location 46,731,462 - 46,731,951
singlet/doubletsinglet
Overlap geneTicam2
Upstream geneKcnn2, Trim36, LOC100042905, Pggt1b, Ccdc112, EG225468, LOC100042916, Mospd4, LOC100042204, Fem1c
Downstream geneEif1a, LOC100042226, Cdo1, Atg12, Ap3s1, LOC100042950, 4833403I15Rik, LOC666798, Gm949, LOC100042241, Commd10, EG628438, LOC667120, Sema6a, LOC628477, 9130209A04Rik, A730092B10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461A05.T7 (MSMg01no461_a05.b1)MSMg01-461A05.TJ (MSMg01no461_a05.g1)
ACCAG546235AG546236
length729732
length of high quality
(start - end)
190 (125 - 314)488 (73 - 560)
definitionCHROMAT_FILE: MSMg01no461_a05.b1 PHD_FILE: MSMg01no461_a05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:27 2005CHROMAT_FILE: MSMg01no461_a05.g1 PHD_FILE: MSMg01no461_a05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAAACCCGCGG
NAATCACCTTTCCTATCTCAAACATTCTGAGNCGGGAGCAAACAGGGAGA
CAGTAATGTTAGAAGCCTTACCCAATTGAACATATCAACCTGGGTGTGAT
TACTCCTGTAATCCCAATGTCTTAAAGAGTAATCCTTGCTATGATGAAAC
ACCATGACCAAAAGCAACTTGTGGAAGAAAGGGTTTATTTGGCTTAGATA
TTCTGAGTCAGTCTAATGAGGGAATCTAAGACAAGAACTCAACTGAATGG
GAACCCAGAGATACATATGCCTTGTTATGAGTGCTGCTTACTGGCTTGCC
CCTCCTATTCTGCTTTCTTATAGAACCCAGAACTACCAGCCAATGGGTGG
CACCACCCTCATTAGGCCCTGCCTTTCCCATCAATCACTAATTAGAAAAT
GTCCTACAGATTTTTCTACAGCCTAATCGTCTGGAGGTATTTTCTCAGCT
GAGGTCCCCTTTTCTCAGTTGACTCTTAGCTTGTGTCAAGCTGACATAAA
ACTATTCTTCACTCTCACCTCACTATTACCATGCAAATGCAGTGATTACT
TGCTCGCTTGTGAGTTAAGTCTATTCTATATACGCACATGCCTATTTTAT
TTTTAAACATCCAATAAGACTACTCCTTTACTTTAAGCCTTCGTTACAAC
TGGTTATTGCTTTTTTTTAGACTATCCCA
AGCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTCAGGAATTCCAGGACAGTCCCAGTTTCAAGCAGC
AGCAACAACAATAACAACAGCTGCGGCAGCAACAACCCAACTGAAAGAAT
AAAGGCAATAAGATTCCTAGGGTTGGCAACATGGCTCAGAGGTGGGTCAC
ATACACAAGGCTCCATCCCCAGTGCTAGCAGAAAGTAACAACAGTTCCTG
GATTGTGACTTTACATGAATGGCAGCAATTTTTACTGAGCTATGGACAGT
TATTAAAAGAGAGCAGAAGATATTTGTCTGACTGCGTTGTCTGTAATATT
AATAGTTCTGTTTGCATAAATTAAAACATCCATCAGATTGCTATATGGGC
ATGTCAAAAGATCTGGATGCATGCTTGCCAACCTAAAAGGAAGCAAAGAT
AGAGATAACAGTTGAGAAGCTGTTGCCATGGGAACTAATGGTTCCAGGTA
GAAATCCTCTTGGGAGAATGTATCTCTAGAAAATGGAGATGATCTAGACC
TGGGCTATGGGCTTAATGCTTTTGTGCACTTGGTAAAGATCATCCCTGTG
TTATTCACACGCTAATCTCACTGCCCTCACATCTTGTTTCAATCCGGACA
TGGCATTATCAAGTTCATGTTCACGAAACCCCTGTTTCAAAATTGTGTAT
TCACTTCTTACCATTAATCCTCCGGCCTTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_a05.g1 MSMg01no461_a05.g1 CHROMAT_FILE:
MSMg01no461_a05.g1 PHD_FILE: MSMg01no461_a05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:27 2005
         (488 letters)



>mm_chr18_46731265_46732151
          Length = 887

 Score =  853 bits (441), Expect = 0.0
 Identities = 478/491 (97%), Gaps = 4/491 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttccaggacagtcccagtttcaagcagcagca--a-caacaataacaacagctgcggcag 57
           ||||||||||||||||||||||||||||||||  | |||||||||||||||||| |||||
Sbjct: 198 ttccaggacagtcccagtttcaagcagcagcagcagcaacaataacaacagctgtggcag 257

                                                                       
Query: 58  caacaacccaactgaaagaataaaggcaataagattcctagggttggcaacatggctcag 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 caacaacccaactgaaagaataaaggcaataagattcctagggttggcaacatggctcag 317

                                                                       
Query: 118 aggtgggtcacatacacaaggctccatccccagtgctagcagaaagtaacaacagttcct 177
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 318 aggtgggtcacatacacaaggctccatccc-agtgctagcagaaagtaacaacagttcct 376

                                                                       
Query: 178 ggattgtgactttacatgaatggcagcaatttttactgagctatggacagttattaaaag 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ggattgtgactttacatgaatggcagcaatttttactgagctatggacagttattaaaag 436

                                                                       
Query: 238 agagcagaagatatttgtctgactgcgttgtctgtaatattaatagttctgtttgcataa 297
           ||||||||||| |   | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 agagcagaagagagagggctgactgcgttgtctgtaatattaatagttctgtttgcataa 496

                                                                       
Query: 298 attaaaacatccatcagattgctatatgggcatgtcaaaagatctggatgcatgcttgcc 357
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 attaaaacatccctcagattgctatatgggcatgtcaaaagatctggatgcatgcttgcc 556

                                                                       
Query: 358 aacctaaaaggaagcaaagatagagataacagttgagaagctgttgccatgggaactaat 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 557 aacctaaaaggaagcaaagatagagataacagttgagaagctgttgccatggggactaat 616

                                                                       
Query: 418 ggttccaggtagaaatcctcttgggagaatgtatctctagaaaatggagatgatctagac 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 617 ggttccaggtagaaatcctcttgggagaatgtatctctagaaaatggagatgatcaagac 676

                      
Query: 478 ctgggctatgg 488
           |||||||||||
Sbjct: 677 ctgggctatgg 687


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 887
Length adjustment: 10
Effective length of query: 478
Effective length of database: 877
Effective search space:   419206
Effective search space used:   419206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)