BAC Information

Click to search

BAC

Clone NameMSMg01-461M19
Chromosome18 (Build37)
Map Location 62,945,443 - 62,945,955
singlet/doubletsinglet
Overlap genenone
Upstream geneAfap1l1, LOC100042738, Ablim3, Sh3tc2, Adrb2, Htr4, Fbxo38, Spink10, EG408198, 2700046A07Rik
Downstream geneApcdd1, Napg, 9430028L06Rik, 9030411M15Rik, LOC627792, Txnl1, Wdr7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461M19.T7 (MSMg01no461_m19.b1)MSMg01-461M19.TJ (MSMg01no461_m19.g1)
ACCAG546838AG546839
length802752
length of high quality
(start - end)
414 (71 - 484)515 (69 - 583)
definitionCHROMAT_FILE: MSMg01no461_m19.b1 PHD_FILE: MSMg01no461_m19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:32 2005CHROMAT_FILE: MSMg01no461_m19.g1 PHD_FILE: MSMg01no461_m19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAATT
CTTTGTATATTTCGCATATTAGCCCTCTATCAGAAGTAGGATTGGTAAAG
ATCTTTTCCCAATCTGTTGGTTTCCATTTTGTTCCATTGACAGTGTCCTT
TGCCTTACAGAGGCTTTGCAATTTCATGAGGTCTCATTTGTCAATTCCTG
ATCTTAGAGCACAAGCTATTGGTATACTGTTCAGGAAATTTTCCCTATGC
CCTTGTGCTCGAGGATCTTCCCCAATTTCTATTGTATTAGTTTCAGTGTA
TCCAGTTTTATGTGGAGTTTCTTGATCCACTTGGATTTGAGTTTTGTACA
AGGAGATAATAATGGAACAATTTGCATGCTTCTACATACTTACTGGCAGA
TGAACCAACACCATTTATTGAAAAGGCTGTCTTTTCCCACTGGATGGTTT
TAGCCCCTTTGTCAAAGATCAAGTGACCATTGATGTGCGCGTTCATTTCT
GGGTTTTCACTCTTATTCCCTTGATGTACTTGCCTGTTATTATACTATTA
CCATGTAATTTCTTTCCCCCATCGACCTTTATTTCCCTTTTTTCCGCTTA
CAATACAATTTCTCCCTTAATATCCTTTTAATTTGCTTGTAAACATTCCT
TCTCCTATTTCCTTTTTTTTTTTGCCCACCTCTTCTTAATTTCCCGCTTC
TACCTTTCTTTTTTATTTTCANCACCCCCCCTTTTCAGTTTACCTCTTAA
CTTTTTTTTCCCCCCTCTCTTTTTTGTTTTTTCTTTAATAAACTTGTCCC
CG
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTGTTTCCTCCTTGAAAAAAAAATCTCAGAA
TTCTCTGCTCCAGGTTTCTTTTGATCAGTTTAAAATGTAGAGAGAAAAGG
CATCATTTGAGAAGTAATTTGAATTCAACAGTTTTCATGACATTTTCCTG
AATATTTCATAGTTGCCTATCTGCAATAATATTTTGGCGTGATTTTCTTA
TATTCAGTATTGTCAAAGCATTCAACTCACCTTGACTAGAAAGAACAAAT
ACACCTGTCACTGANTTTTATCTATTAATTGTATAATGATGGTGACAAGT
CCAACCAAAATGAACAAGATGCAAAGCTATGTACCTGTGAAGGGGTTACC
AGGGACTGAACCCAGGGCCTCTTGCATGGTAAGCCAGTGCTCTTCCACTG
AGCTACACCTGGGGTTCTCACTCGCATCTCCTTTCTGGGCCATGGAGAGC
AATGAGCAAACCAGAGAGCAGCTGTGAGAACCCTTAGCTCACTTCAAGCA
TCCACTGCTGTGCTCTCTGCAAGTGTTGGAGCAGATGGGTGAGCAACCAT
TCATGGGGTTCTGTTGTTGTTATTATCACCTTCCTGAGATCTTTATGATC
TAGCACTTTACCAGGAGGTTTCCTCCCATAAATTCCGCCAAAACTGGTAA
ACACTACCAAACCATTGTTCCCAACCCACCTTTTATCCCTAGTTTTTGGT
TN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_m19.g1 MSMg01no461_m19.g1 CHROMAT_FILE:
MSMg01no461_m19.g1 PHD_FILE: MSMg01no461_m19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:32 2005
         (515 letters)



>mm_chr18_62945439_62946352
          Length = 914

 Score =  913 bits (472), Expect = 0.0
 Identities = 504/515 (97%), Gaps = 2/515 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgtttcctccttgaaaaaaaaatctcagaattctctgctccaggtttcttttgatcag 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 517 tttgtttcctccttg-aaaaaaaatctcagaattctctgctccaggtttcttttgattag 459

                                                                       
Query: 61  tttaaaatgtagagagaaaaggcatcatttgagaagtaatttgaattcaacagttttcat 120
           |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 458 tttaaaatgtagagggaaaaggcatcatgtgagaagtaatttgaattcaacagttttcat 399

                                                                       
Query: 121 gacattttcctgaatatttcatagttgcctatctgcaataatattttggcgtgattttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gacattttcctgaatatttcatagttgcctatctgcaataatattttggcgtgattttct 339

                                                                       
Query: 181 tatattcagtattgtcaaagcattcaactcaccttgactagaaagaacaaatacacctgt 240
           | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tgtattcagcattgtcaaagcattcaactcaccttgactagaaagaacaaatacacctgt 279

                                                                       
Query: 241 cactganttttatctattaattgtataatgatggtgacaagtccaaccaaaatgaacaag 300
           |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 cactgatttttaactattaattgtataatgatggtgacaagtccaaccaaaatgaacaag 219

                                                                       
Query: 301 atgcaaagctatgtacctgtgaaggggttaccagggactgaacccagggcctcttgcatg 360
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| 
Sbjct: 218 atgcaaagctatgtacctgtgaagggg-taccagggactgaacccagggcctcttgcata 160

                                                                       
Query: 361 gtaagccagtgctcttccactgagctacacctggggttctcactcgcatctcctttctgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 gtaagccagtgctcttccactgagctacacctggggttctcactcgcatctcctttctgg 100

                                                                       
Query: 421 gccatggagagcaatgagcaaaccagagagcagctgtgagaacccttagctcacttcaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99  gccatggagagcaatgagcaaaccagagagcagctgtgagaacccttagctcacttcaag 40

                                              
Query: 481 catccactgctgtgctctctgcaagtgttggagca 515
           ||||||||||||||||||||||||||| |||||||
Sbjct: 39  catccactgctgtgctctctgcaagtgatggagca 5


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 914
Length adjustment: 10
Effective length of query: 505
Effective length of database: 904
Effective search space:   456520
Effective search space used:   456520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)