BAC Information

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BAC

Clone NameMSMg01-464I05
Chromosome18 (Build37)
Map Location 75,419,149 - 75,419,392
singlet/doubletsinglet
Overlap geneDym
Upstream geneMbd1, Ccdc11, LOC628298, LOC668124, LOC668126, Myo5b, Acaa2, LOC672799, Lipg, Rpl17, BC031181, LOC628356, EG667777
Downstream geneSmad7, Gm672, Zbtb7c, 4833419G08Rik, LOC668184, Smad2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464I05.T7 (MSMg01no464_i05.b1)MSMg01-464I05.TJ (MSMg01no464_i05.g1)
ACCAG548911AG548912
length7421,020
length of high quality
(start - end)
244 (73 - 316)---
definitionCHROMAT_FILE: MSMg01no464_i05.b1 PHD_FILE: MSMg01no464_i05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:18 2005CHROMAT_FILE: MSMg01no464_i05.g1 PHD_FILE: MSMg01no464_i05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGC
GGAATTCAGGATTTGCCTGCGGCGAGTTGGGAAGAAGAGGTGCTGACTGA
GGTTGCGGGCTAGGGAGGCCGAAGGAGCAAAGGGCGCTTGCTCTGTTTTA
TAGAGAAAACACGCCATGAAGTGCTTTCCAGTGGAGGACGGTGATTACTT
CCTGCTCTGTTCTGGCAAAGGTCTGATCTACCCTAAAAAGAGCTCTAGCC
CCTCCACCCCAACACACACACTTCAACGCGTGTTAGCACATATTTCCTGT
GTTGATGGTGGCCATCGCTGATGACGACGACACTGAGGAAACACTGAATA
CAGCAGCAGAGCCAAGCAAACACACAAACAACCCGCCCTTAGCTTTCAGT
TCCCAGGACACACTCTGGTAACGTGTTTCCTCTTGTGGGAGTACATGCTC
CTAAACATGACTGTGAGTGCAGTCGAGATCACATGAAAAATATTATGTTT
TTAACTCTGAGTCTGGAAGACATATTAAGGAAACTCTGCGCGCTGTTCTT
CTTCTAGACACACTAGTCACTTCCGACTTCTGATTTACTCCTCGTGCTGC
CCACACCACGCTCTAATTCTATCCCATTACCCTGCTTTGAAATACGCATC
CCCCCTCGCAATTCCCATCTCTGCTCCCCGCATCTACTGCCGGGTTGTTT
GTTTTATACCCTCCCCTAACCCTTCATCGATCCTCTCCGCTN
CCCTCCAACTTTTNNCGCCTTNGCCCCCGCGCGGGTACGCGATTTACTCC
AGAGCAAACAGACTACACAAGTCCCCCCCAAACTAGGCCCAACAGATACC
CNNNNNAGCGGCACANNAGAGGNNTNTNCCGCGGATGGGAGAAATTGGGG
GNTAAGGNAGCCTGGGGAGGGGGNCCGGNCCCGTGGGGGNTCGTTCCTGA
AAAAAAAAGGGGAGGGGGGGGGACGACCCTGAATAAGGNAAAGGGGAATT
CCTGCGGCGGAGAAAAAAGAACCAAGGGGGGGGGCTAAAAAAAGGAATTT
TCGCCACCCGGGGTGTGGGGGGGGAAATTTAAGAAGGGGTTTTTTGTCCC
CTGTTTTGGGGGGTCTCGGGGGGAAACACAAAAAAAAAACAAGGGGGGGG
CCCGGGGGGGAAAAAATAAAAAAGAGGCCCCGTTCTTAGAAAAGCCCCCG
TCTGTGGCGAAAAAAAACTGGGAAAAAAAGGGGGGGGAAAAACCCCTTNT
TGGGGCCCGGGGGGCGTGGGGAGCCTCCCCCCTCCCCCAAAAAAAAAAAA
AAAAAAAAGAGGGGGCCCCGGCGGGGGAAAAAAAAAACCCGCCGGGGGAG
AGGAATTTTTCTCGGGGGGGGGAGAAAAAAACACACAAAAAGGGGGGGGG
GGCGGAATACAAAAAAANAGGTGGTGGAGGGAGGGGGGGGGAGAAAACAA
TGTGGTGGGGGGCGCCCCCCCCACCCCCCCCCACACCAGGGAGGGGGGNG
GGGAGGGGCAAAACACACCTCCCCCCCACAGAAGGAGGGGGNGGGCGCGC
CGCCCCCGAGGGCAGGCCCGTGTTGGTTTTTTATTTTATACAGAAGAGGG
GGGGGCCAGAAGACACCGGGGGCNGACCANCAACACACAAACACCAACGT
CACCACACTCGCGCAAAAAAAGAAGAACGAAGGAGTGGGAGGAGAGACCG
AATAACCCGACAACAACACCAAATAGACACAACGACCGCCGTCGCCCGGG
AGGCGCCGCGCGGGGAGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_i05.b1 MSMg01no464_i05.b1 CHROMAT_FILE:
MSMg01no464_i05.b1 PHD_FILE: MSMg01no464_i05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:18 2005
         (244 letters)



>mm_chr18_75418949_75419592
          Length = 644

 Score =  456 bits (236), Expect = e-133
 Identities = 242/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cgagttgggaagaagaggtgctgactgaggttgcgggctagggaggccgaaggagcaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 444 cgagttgggaagaagaggtgctgactgaggttgcgggctagggaggctgaaggagcaaag 385

                                                                       
Query: 61  ggcgcttgctctgttttatagagaaaacacgccatgaagtgctttccagtggaggacggt 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggcgtttgctctgttttatagagaaaacacgccatgaagtgctttccagtggaggacggt 325

                                                                       
Query: 121 gattacttcctgctctgttctggcaaaggtctgatctaccctaaaaagagctctagcccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gattacttcctgctctgttctggcaaaggtctgatctaccctaaaaagagctctagcccc 265

                                                                       
Query: 181 tccaccccaacacacacacttcaacgcgtgttagcacatatttcctgtgttgatggtggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tccaccccaacacacacacttcaacgcgtgttagcacatatttcctgtgttgatggtggc 205

               
Query: 241 catc 244
           ||||
Sbjct: 204 catc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)