TTTCCGTGGGGNNNNNNNNTTTTCTATXXXXXXXXXXXXXXXXXXXXXXX
XXTTTTCACAAAAGAGGATCCGCGGAATTCACTTTACATTGGAATTAGCC
CAGAATCTGAGAATACCCAAAATACAATTCGTAAACTACATGAAACTCAA
GAAAAAGGAAGACTGAAGTATAGATACTTCAATTTCTTCTTTAGAAAGGG
GGAACAAAAATTCCCCTTGGGAACGAAGTTATTTAAAGAAAAAAAAGGGG
GGGGAAAAAAAAAAAAAAAACTGTGGTAGAAGGAGTATGGGGGGTGTGTN
TCCCTTTCTTCTACCTTCCCCCTTATATTTATATAAAAGAAAGTTTTCCA
ATATCTNCAAAAAAAAAACACCCCCGCCGGGGGGGGGGGTGAACCTCCCC
TTCCTCTATATTNTAAAAAAANNANNTANCAAACATTTCCNTCACACACC
CTTTCNNGNNGNGCCCCCCCCCCCCCCCCCTTTTTTTTTTTTATAAAAAA
ACAAAAATTTTTTTTTTTTGTGGGGGAGCCACCAACCATTTTTTTTTTTT
TTTTTTTTTNTTNAAAAAAGAACACCACCCCCCCCCCCCCCCCTTTTGTT
GTGTTAATTAAAAAAGAAAGGGGGGGCGGGG

TTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGGTCTGGAACTCAAGCAGGTCAGGAAGCA
GGAGCTGATGGAGAGGCCATGGAGGGATGTTACTTACTGGCTTGCACAGC
CTGCTCTCTTATAGAACCCAAGACTACCAGCCCAGGGATGGTCCCACCTA
TAAGGGGCCTTTCCCCCTTAATCATTAATTGAGAAAATGCCTTACAGCTG
GATCTCATGGAGGCATTTCCTCAACTGAAACTCCTTTCTCTGTGATAACT
CCAGCTTGTGTCTAGCTGACACACAAAGCCAACCAGTACAAATTATAAGA
TTTTTCATTAAAGTTAAAACACAACACATGTTAAAAAGAAGTATTAAGAT
ATTAAAATAAATTATTTTAATCAGCTTGCTTTTCATATGACAATGATGTG
CCCTCTTTTGTACTTAGAATGTTGTTTAGATTTCATATGTCACTACATGT
ATATCTGCTGTTCTCTAGAAATGCTCCCTTCCTCTCTTGTCTTATTCTTC
TCCATTCCTACTTTCTTCCTTCGATTTCCACGTTCACTATTTTTGCTTAA
TTTGTGTCTCACAAGGTTTAACTAGGGCCTTCTTGTGTGACTCTGGGCTG
GGTATTATCAATTAGAGCCGCATGTGCTCACTTATGACCTATGTGGACAG
ATGTTATGTGCTTCCCCC

Query= MSMg01no465_b11.g1 MSMg01no465_b11.g1 CHROMAT_FILE:
MSMg01no465_b11.g1 PHD_FILE: MSMg01no465_b11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:04 2005
         (578 letters)



>mm_chr18_19655550_19656527
          Length = 978

 Score =  841 bits (435), Expect = 0.0
 Identities = 476/499 (95%), Gaps = 16/499 (3%)
 Strand = Plus / Minus

                                                                       
Query: 80  cctgctctcttatagaacccaagactaccagcccagggatggtcccacctataaggggcc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 978 cctgctctcttatagaacccaagactaccagcccagggatggtcccacctataaggggcc 919

                                                                       
Query: 140 tttcccccttaatcattaattgagaaaatgccttacagctggatctcatggaggcatttc 199
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 918 tttcccccttaatcattaattgagaaaatgccttacagttggatctcatggaggcatttc 859

                                                                       
Query: 200 ctcaactgaaactcctttctctgtgataactccagcttgtgtctagctgacacacaaagc 259
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 858 ctcaactgaaactcctttctctgtgataactccagcttgtgtcaagctgacacacaaagc 799

                                                                       
Query: 260 caaccagtacaaattataagatttttcattaaagttaaaacacaacacatgttaaaaaga 319
           || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 798 cagccagtacaaattataagatttttcattaaagttaaaacacaacacatgt-aaaaaga 740

                                                                       
Query: 320 agtattaagatattaaaataaattattttaatcagcttgcttttcatatgacaatgatgt 379
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 agtattaaaatattaaaataaattattttaatcagcttgcttttcatatgacaatgatgt 680

                                                                       
Query: 380 gccctcttttgtacttagaatgttgtttagatttcatatgtcactacatgtatatctgct 439
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 679 gccctctttggtacttagaatgttgtttagatttcatatgtcactacatgtatatctact 620

                                                                       
Query: 440 gttctctagaaatgctcccttcctctcttgtcttattcttctccattcctactttcttcc 499
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 619 gttctctagaaatgctcccttcctctcttgtcttattctcctccattcctactttcttcc 560

                                                                       
Query: 500 ttcgatttccacgttcactatttttgcttaatttgtgtctcacaaggtttaactagggcc 559
           |||               ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttc---------------tatttttgcttaatttgtgtctcacaaggtttaactagggcc 515

                              
Query: 560 ttcttgtgtgactctgggc 578
           |||||||||||||||||||
Sbjct: 514 ttcttgtgtgactctgggc 496


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space:   549824
Effective search space used:   549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)