BAC Information

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BAC

Clone NameMSMg01-466P07
Chromosome18 (Build37)
Map Location 89,324,759 - 89,325,193
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039972, LOC623177, LOC665497, LOC100040003, LOC623208, Socs6, Rttn
Downstream geneCd226, Dok6, LOC383320, LOC620693
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466P07.T7 (MSMg01no466_p07.b1)MSMg01-466P07.TJ (MSMg01no466_p07.g1)
ACCAG550781AG550782
length1,381769
length of high quality
(start - end)
---433 (84 - 516)
definitionCHROMAT_FILE: MSMg01no466_p07.b1 PHD_FILE: MSMg01no466_p07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:39 2005CHROMAT_FILE: MSMg01no466_p07.g1 PHD_FILE: MSMg01no466_p07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GAGTGAGTATATTATGTAGGCGTCCTGCGGCGTTATATACAGAGAAGTGA
AAAAGGGGATGTGTTTCACATATAGAGTAAGGGGGAGGCGCGNGACGGGT
GCGTACTTCCTCCTCATCGAGTACGACGTAGGAGTCTCGCGGTCGCGCTC
TCTACGCGCGAAGAGCTAGAGCGTATACAAGACTTGACCACTTATCAAAA
CGCNCACCAAAGCGAAGAGATCCGACGAAGCCGACGCAGCACGCCGCGTC
GCGCGCGACAACGACACACGCGTGCAGGCACACTATCTCGTGTGATCACT
ATGTTGTGTGTATGGCCGCGCCGGCAGTTATCACGCNCACCGCTTGTAGA
TTGAACGCTCTCATATATAGCAGACGGACATACTACCGACCGGCGNCCGG
ACGAGCGCACAGATGTAGGAAGCGGTAGAAGAGGGAGGGAGATAGTATAG
TGGAGCAGCGACGAACGGAGGATGATGAGATGTTAAGTTGGTGCAGCTGG
GATCGTGTGTGCCGTGCGCGCGCGTTGTGCGCATGCGCAGCGCACATGGT
ACATGCATNTCATCTGTTCTGTCTCTCGACACGCCTCTCGCTCTATACCA
TACTATTCCATCTACATATACACGACGCTACACTTACCGATCCCACACTA
TTGATCACCTTACCAATAGCGGATCACCTCGATTGGTAATGGCGCGAGCG
GTGGCGCTCGCAGGCGAGCGCTGCGCGCGTCGTCCGCTTTGTGTTGGGAC
CCGCGCTCACTGCACATCAGTATACTTATCTACACATACCTCATATCCAA
CGTAATAGACTGAAGATAGATGCCTAGGCGAGTAGAGCTGTATACGTACG
ACGGAGTTACAACTGACAGTTCACCGACGATACATGAGATACACATAAGA
CACACACTACTTCGCGCGCATACTCCCTCGGATAGAGCACGCNTAACTAA
TTGTAGTGGNAATATGCGCTGTGNCGGCTCTCGCCGCGCAGCTCTCACAT
ATGCTGAGACGTACATCGCTGTATGTTANCTACGCACTATCATGATACAC
TACGATATANTGTATGCTCTCCANCACGCAGAGTATGCGTGATCGGGCTC
GCGACGTGTATATGTGGTGTCTGTAGTAGTGTGGCGCTGCCGANTGTGCG
AGGGNGAGTACGANATACATTCACAGATATGCGACCGAGGTCTATGCATG
ATGTGATAGTGCTTCACTCGTACGGACCAGTCACTCGCGATGTGATCACT
ACTATGGATGCGACTGTCACACTACGCTATACTGTGTATCGTCGCTGCAC
ACTGTTACGTACGAGACAGCCGACTTGATACGCGNAGACACTAGCAGTCG
GNAGTACACGCAGCATGTGACATATGTAGCG
NCCCCCCACTATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACATTTATGTTGCAG
GAAATTTTTGTCTTTAAATCTGCATAAAAATAAAGACCTCCAAATTAGTG
GGTCAAATGTCTGTTAAAAGAAGTTTAAAGCCAGGCATGGTGGTGTATGC
CTTTAATCCCAGCACTTGAGAATGCAGAGGCAGGCGGATTTCTGAGTTCG
AGGCCAGTCTGGTCTACAAAGTGAGTGCCAGGACAGTCAGGGCTACACAG
AGAAACCCTGTCTCAAAAAACCATAAAAAAAAAAAAAAGTTTGAAAAATT
ATGACAGAATTTATGTCTTCATTTCTAAACTATTTATATTCTTAATACCT
TTGTTAAAACATTAGGTTTAGGTTGATATGGAAGTATAGATTTATTCCTA
GGACCTCTATTCTATTACATTGTTATATATATCTGGATTTTTTGTCTGTC
TGTCTGTTTGTTTGTTTGATTGATTGAATGGGGTTTCGCATGCCAAATCA
TCCCTTTGCATTTTTTGTATTCAAATCTTATATGTCCGTATTCTACCTTT
TTCTGTTTAATAATTGCCTTGCTCATTCCCACACACTTCTCATTTCCACA
ATATTCTATTTATTTTTCCCCCTATCTCCCCGTATATTTCCTATGTACCT
CTTCTCATTTTCTTTCTTTATCTCTTCTTATTCACAAGGCTTACGCCTCT
CTTCTCTCCTCTCTCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_p07.g1 MSMg01no466_p07.g1 CHROMAT_FILE:
MSMg01no466_p07.g1 PHD_FILE: MSMg01no466_p07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:40 2005
         (433 letters)



>mm_chr18_89324561_89325393
          Length = 833

 Score =  806 bits (417), Expect = 0.0
 Identities = 430/435 (98%), Gaps = 2/435 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcacatttatgttgcaggaaatttttgtctttaaatctgcataaaaataaagacctccaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 199 tcacatttatgttgcaggaaatttttgtctttaaatctgcataaaaataaaggcctccaa 258

                                                                       
Query: 61  attagtgggtcaaatgtctgttaaaagaagtttaaagccaggcatggtggtgtatgcctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 attagtgggtcaaatgtctgttaaaagaagtttaaagccaggcatggtggtgtatgcctt 318

                                                                       
Query: 121 taatcccagcacttgagaatgcagaggcaggcggatttctgagttcgaggccagtctggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 taatcccagcacttgagaatgcagaggcaggcggatttctgagttcgaggccagtctggt 378

                                                                       
Query: 181 ctacaaagtgagtgccaggacagtcagggctacacagagaaaccctgtctcaaaaaacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ctacaaagtgagtgccaggacagtcagggctacacagagaaaccctgtctcaaaaaacca 438

                                                                       
Query: 241 taaaaaaaaaaaaaa--gtttgaaaaattatgacagaatttatgtcttcatttctaaact 298
            ||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 439 aaaaaaaaaaaaaaaaagtttgaaaaattatgacagaatttatgccttcatttctaaact 498

                                                                       
Query: 299 atttatattcttaatacctttgttaaaacattaggtttaggttgatatggaagtatagat 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 atttatattcttaatacctttgttaaaacattaggtttaggttgatatggaagtatagat 558

                                                                       
Query: 359 ttattcctaggacctctattctattacattgttatatatatctggattttttgtctgtct 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttattcctaggacctctattctattacattgttatatatatctggattttttgtctgtct 618

                          
Query: 419 gtctgtttgtttgtt 433
           |||||||||||||||
Sbjct: 619 gtctgtttgtttgtt 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)