BAC Information

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BAC

Clone NameMSMg01-467A01
Chromosome18 (Build37)
Map Location 29,998,351 - 30,149,335
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040930, 4930578E11Rik, LOC666073
Downstream genePik3c3, LOC666094, LOC666100, EG666111, EG666114, LOC433168, Rit2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467A01.T7 (MSMg01no467_a01.b1)MSMg01-467A01.TJ (MSMg01no467_a01.g1)
ACCAG550817AG550818
length729777
length of high quality
(start - end)		547 (47 - 593)338 (75 - 412)
definitionCHROMAT_FILE: MSMg01no467_a01.b1 PHD_FILE: MSMg01no467_a01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:43 2005CHROMAT_FILE: MSMg01no467_a01.g1 PHD_FILE: MSMg01no467_a01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,998,351 - 29,998,893)(30,148,998 - 30,149,335)
sequence
NCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATCATTTCTTCCAGAAGAGCATCCATATCTCAAAGAAACAGAAA
CTGGGTGGATGATTCTGTTTCAAGAAGGCGAGGGCAGTGAACAGTAAACT
CAGAGATATTTCAGTGGCTGGCTCCATGGTGGAAATCGAAGATTTGGGGA
AGTAATCATGTCTCCTCAGCCTGCCTTCTCTCACTGAACATTCCACTCAT
CAATTCATTAATCTTTGTAACTCCCCTACAGCGAGGTGACTATTATTTGC
CTGAGGTTGTAGGTGGAGAGACAGAACTAAAGTACAGTGAACTTCATCAA
TATGCCCAAGATCACAGCAGGAGATGGAGATGTCAGTAACATCTGAGCTC
AGAAGCATCTTCAACTTTCCTCCCTCTGGATCCAGAGATACCCTCTGCCT
CACTATTAGCATAATTGTTAAGGGAGGATGTCATTTTCCTTCTGAGTTGT
GCCAACTGAAGCTACTGAACTCTCCTGAGCACACATACAGCTGAGTCTCT
CTAACATCTACACTGCCACATGCCTGCATGATTCCTCCCTTTTCCTCACC
TAGCTGTCAACAGCTTCTCTGCCTGATAGAATGCACTGACTTGGGCTGGC
AAAAAATATGTTTTGGGAAAAAATAGAATGGTCCTTTTTTAGCCGGTTAC
TAATAACCTGAATAACCTTTTCCTCTGGA

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATAGGTGGTTCTGCAAGGGAAATAAC
AAGGTTATATAATTTGTCTCACAGTTCAATAAATATCAGAAGCTACAAGA
ACTGTTGTAGAAGTTTAAAAAGGATGCAATTATGATGTCTGCTTCGCCCC
AAGCTTACTACTTGTTTGATCTACCACAAAAGAATTTACATGCTCTGCCA
CAGGAAATATGAAATACTCGGAGACTACCTCTCTGTCTCACAGTATGGTA
AAGACAATAAATAGCTACTAATTCTGGGTCATTGATGAAGGAAAACAGAT
ATAAGATGTACTAGAGAGAGTGTGAAGAATTTTATTTGGGGGAAGGGAAA
GAAGATGATATTTAAATATACCTAACGCGCTCACACTATGCTATTTCCAA
TCTCTGCTCAGTTCTTAGTTGGCTTTTTATGTATTACTACTCGATCTCTT
TATTCCTATTTATAAATTTTGCCTCTTTACTTTCTTTACCTCCTCCCTTT
CACTTTTCACCGCCCTATAATGTTTTCCTTCTAATACCTTCCATCATCCT
TACACCCTCATTTACCCTTGCTTACTCCTTTCTCTCCCTCCCTCGCCTTT
CTTTTCTTTATCCGCTCCTCTTCTCACCTTTATTTGCTTTGGTTCCCTCC
CTTCCCCCCCTTTTTTTCTCACTCTCTTTTGTTCTCTCCCTTCTTCTCTT
CTCTTTTTCTCTTTCCCCTCTCCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_a01.b1 MSMg01no467_a01.b1 CHROMAT_FILE:
MSMg01no467_a01.b1 PHD_FILE: MSMg01no467_a01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:43 2005
         (547 letters)



>mm_chr18_29998147_29999093
          Length = 947

 Score = 1035 bits (535), Expect = 0.0
 Identities = 541/543 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatcatttcttccagaagagcatccatatctcaaagaaacagaaactgggtggat 64
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatcatttcttggagaagagcatccatatctcaaagaaacagaaactgggtggat 264

                                                                       
Query: 65  gattctgtttcaagaaggcgagggcagtgaacagtaaactcagagatatttcagtggctg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gattctgtttcaagaaggcgagggcagtgaacagtaaactcagagatatttcagtggctg 324

                                                                       
Query: 125 gctccatggtggaaatcgaagatttggggaagtaatcatgtctcctcagcctgccttctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gctccatggtggaaatcgaagatttggggaagtaatcatgtctcctcagcctgccttctc 384

                                                                       
Query: 185 tcactgaacattccactcatcaattcattaatctttgtaactcccctacagcgaggtgac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcactgaacattccactcatcaattcattaatctttgtaactcccctacagcgaggtgac 444

                                                                       
Query: 245 tattatttgcctgaggttgtaggtggagagacagaactaaagtacagtgaacttcatcaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tattatttgcctgaggttgtaggtggagagacagaactaaagtacagtgaacttcatcaa 504

                                                                       
Query: 305 tatgcccaagatcacagcaggagatggagatgtcagtaacatctgagctcagaagcatct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tatgcccaagatcacagcaggagatggagatgtcagtaacatctgagctcagaagcatct 564

                                                                       
Query: 365 tcaactttcctccctctggatccagagataccctctgcctcactattagcataattgtta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcaactttcctccctctggatccagagataccctctgcctcactattagcataattgtta 624

                                                                       
Query: 425 agggaggatgtcattttccttctgagttgtgccaactgaagctactgaactctcctgagc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agggaggatgtcattttccttctgagttgtgccaactgaagctactgaactctcctgagc 684

                                                                       
Query: 485 acacatacagctgagtctctctaacatctacactgccacatgcctgcatgattcctccct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acacatacagctgagtctctctaacatctacactgccacatgcctgcatgattcctccct 744

              
Query: 545 ttt 547
           |||
Sbjct: 745 ttt 747


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no467_a01.g1 MSMg01no467_a01.g1 CHROMAT_FILE:
MSMg01no467_a01.g1 PHD_FILE: MSMg01no467_a01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:44 2005
         (338 letters)



>mm_chr18_30148798_30149535
          Length = 738

 Score =  654 bits (338), Expect = 0.0
 Identities = 338/338 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataggtggttctgcaagggaaataacaaggttatataatttgtctcacagttcaataaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ataggtggttctgcaagggaaataacaaggttatataatttgtctcacagttcaataaat 479

                                                                       
Query: 61  atcagaagctacaagaactgttgtagaagtttaaaaaggatgcaattatgatgtctgctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 atcagaagctacaagaactgttgtagaagtttaaaaaggatgcaattatgatgtctgctt 419

                                                                       
Query: 121 cgccccaagcttactacttgtttgatctaccacaaaagaatttacatgctctgccacagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 cgccccaagcttactacttgtttgatctaccacaaaagaatttacatgctctgccacagg 359

                                                                       
Query: 181 aaatatgaaatactcggagactacctctctgtctcacagtatggtaaagacaataaatag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 aaatatgaaatactcggagactacctctctgtctcacagtatggtaaagacaataaatag 299

                                                                       
Query: 241 ctactaattctgggtcattgatgaaggaaaacagatataagatgtactagagagagtgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ctactaattctgggtcattgatgaaggaaaacagatataagatgtactagagagagtgtg 239

                                                 
Query: 301 aagaattttatttgggggaagggaaagaagatgatatt 338
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 aagaattttatttgggggaagggaaagaagatgatatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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