BAC Information

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BAC

Clone NameMSMg01-467P05
Chromosome18 (Build37)
Map Location 17,795,819 - 17,971,672
singlet/doubletdoublet
Overlap genenone
Upstream geneCdh2, LOC665519, 1700001G01Rik, 4921533I20Rik
Downstream geneLOC100040647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467P05.T7 (MSMg01no467_p05.b1)MSMg01-467P05.TJ (MSMg01no467_p05.g1)
ACCAG551536AG551537
length757733
length of high quality
(start - end)		459 (70 - 528)459 (79 - 537)
definitionCHROMAT_FILE: MSMg01no467_p05.b1 PHD_FILE: MSMg01no467_p05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:58 2005CHROMAT_FILE: MSMg01no467_p05.g1 PHD_FILE: MSMg01no467_p05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,795,819 - 17,796,270)(17,971,214 - 17,971,672)
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGG
AATTCTCTATATTTACGAATTGAATGAGAGAAAGGAGAAGTAAGAATATA
GAGATCATAGAAAAGTTTAATTTCCAAAATTGGAGTTAAAATGAAGAGTA
AGAAGTTTAAAATTCTAAATAATAAATGCAGATTATTGTATGTAAATAAA
TTGAGATAAACTGGATGTTTTAGTCTGACCTCCTATTCATTTCTATCTCC
CATAGGATTATCCTGAAATATATTGGAATTAGTGTGGGCTGGTGTTAACA
CAGAAGTTTCTAAGGTTGATCCTTAGAACAATAATCCTGAGAGTTCCTGC
TGAATTATGAAGGGAGATTCCACTCAGTATATTATCTTAGAGAGTCCCAA
CACACATTATTAGAACTCTGAGAAGAACTGCTTTGCAAGAGTTTGTTCAA
GTTGACTTATTAAAATCTCTCCAAACTTATTAACTTATCCCTCTTCTAAA
CAGGGAAATTTTTATTTTTTTCTAAAACAAGTATCAATAAACACTTAAAA
CGTAAATATTTTTGTACCATGCCTTTGGTTATTATGTCTAAGTTATTTAT
AATATTGTAAATGTGAATCCCTATTCAGTTTCTTGTCCAAAATATATTGG
GTTTTAATTATTTTTTTAATATTCATTTACAGTCAATTTATAATTCCGTT
TTTTTTTCTCTCATCTTTTACTCTTTTTTTATTCCCTGCTCTTACTTCTT
TTCTTTT

CCTCAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACCACAGCAGAAACCCAAAGGG
AGTTTGCGTTTTCATTCCTCATCAAAGTTGTGCACGAAGATCATTTTGCA
CATTTGTGCATCTGCTCGTTTACTTACTCATGTGTAGTGAAATACATATT
ACATGTTAAAAAGTAAATAACTCCTTTTTTATTGTTATATGTATGTAAAC
ATTCCTTACCACTGAGCTTTCTTTAGTCCCGTTTTAGAACTTGAAGTAGT
TCTAAGATAGAAATCAAAGCTATTTAAGAGCAGAGTAATACAAATATATT
TTATAGATATGATAAGTCTCAGAAATCCTGTAGGATACAGCTGGAAAATA
TGGAGACTGGCAAATATCAAATGGGCAGTTAGAGAAGGGATGTCTACTGC
TCTGTCTTTGTGCTGCTTCACCCACACAAGTACTATTTCTAACATAAATT
CATATTTTTCCAGAACTAGTTCCTATTTCTCGCTTCCAAACACCAACGAT
GCCTCAGAAAAATGTAACAACTAACATGCCAAAGATATGCTCAAAAATTC
CGCTGGGGGCAAAGGACTTGACTATTAAAGGGCCCCCCCAGCCTCCTGGT
ATACCAGTAAAACCCTCCTCATATGTGGAGTAAACCCCGCGTAAATGTTT
TAAAAAGAAATTTTTGTAGGGGCTGAACCAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_p05.b1 MSMg01no467_p05.b1 CHROMAT_FILE:
MSMg01no467_p05.b1 PHD_FILE: MSMg01no467_p05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:58 2005
         (459 letters)



>mm_chr18_17795619_17796477
          Length = 859

 Score =  797 bits (412), Expect = 0.0
 Identities = 442/452 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgaatgagagaaaggagaagtaagaatatagagatcatagaaaagtttaatttccaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgaatgagagaaaggagaagtaagaatatagagatcatagaaaagtttaatttccaaaa 260

                                                                       
Query: 61  ttggagttaaaatgaagagtaagaagtttaaaattctaaataataaatgcagattattgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggagttaaaatgaagagtaagaagtttaaaattctaaataataaatgcagattattgt 320

                                                                       
Query: 121 atgtaaataaattgagataaactggatgttttagtctgacctcctattcatttctatctc 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 atgtaaataaattgagataaactggatgttttagtcttacctcctattcatttctatctc 380

                                                                       
Query: 181 ccataggattatcctgaaatatattggaattagtgtgggctggtgttaacacagaagttt 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccataggattctcctgaaatatattggaattagtgtgggctggtgttaacacagaagttt 440

                                                                       
Query: 241 ctaaggttgatccttagaacaataatcctgagagttcctgctgaattatgaagggagatt 300
           |||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaagggtgatccaaagaacaataatcctgagagttcctgctgaattatgaagggagatt 500

                                                                       
Query: 301 ccactcagtatattatcttagagagtcccaacacacattattagaactctgagaagaact 360
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccactcagtatattatcttggagagtcccaacacacattattagaactctgagaagaact 560

                                                                       
Query: 361 gctttgcaagagtttgttcaagttgacttattaaaatctctccaaacttattaacttatc 420
           | |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 561 gatttgcaagagtttgttcaagttgatttaataaaatctctccaaacttattaacttatc 620

                                           
Query: 421 cctcttctaaacagggaaatttttattttttt 452
           |||||| |||||||||||||||||||||||||
Sbjct: 621 cctcttttaaacagggaaatttttattttttt 652


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no467_p05.g1 MSMg01no467_p05.g1 CHROMAT_FILE:
MSMg01no467_p05.g1 PHD_FILE: MSMg01no467_p05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:58 2005
         (459 letters)



>mm_chr18_17971014_17971872
          Length = 859

 Score =  880 bits (455), Expect = 0.0
 Identities = 458/459 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   accacagcagaaacccaaagggagtttgcgttttcattcctcatcaaagttgtgcacgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 accacagcagaaacccaaagggagtttgcgttttcattcctcatcaaagttgtgcacgaa 600

                                                                       
Query: 61  gatcattttgcacatttgtgcatctgctcgtttacttactcatgtgtagtgaaatacata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 gatcattttgcacatttgtgcatctgctcgtttacttactcatgtgtagtgaaatacata 540

                                                                       
Query: 121 ttacatgttaaaaagtaaataactccttttttattgttatatgtatgtaaacattcctta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 ttacatgttaaaaagtaaataactccttttttattgttatatgtatgtaaacattcctta 480

                                                                       
Query: 181 ccactgagctttctttagtcccgttttagaacttgaagtagttctaagatagaaatcaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ccactgagctttctttagtcccgttttagaacttgaagtagttctaagatagaaatcaaa 420

                                                                       
Query: 241 gctatttaagagcagagtaatacaaatatattttatagatatgataagtctcagaaatcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 419 gctatttaagagcagagtaatacaaatatattttatagatatgataagtctaagaaatcc 360

                                                                       
Query: 301 tgtaggatacagctggaaaatatggagactggcaaatatcaaatgggcagttagagaagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tgtaggatacagctggaaaatatggagactggcaaatatcaaatgggcagttagagaagg 300

                                                                       
Query: 361 gatgtctactgctctgtctttgtgctgcttcacccacacaagtactatttctaacataaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gatgtctactgctctgtctttgtgctgcttcacccacacaagtactatttctaacataaa 240

                                                  
Query: 421 ttcatatttttccagaactagttcctatttctcgcttcc 459
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 ttcatatttttccagaactagttcctatttctcgcttcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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