BAC Information

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BAC

Clone NameMSMg01-468A12
Chromosome18 (Build37)
Map Location 58,225,151 - 58,225,541
singlet/doubletsinglet
Overlap geneFbn2
Upstream geneMegf10, LOC672445, Prrc1, 1700011I03Rik, 4930511M06Rik, 2210409D07Rik, Slc12a2, 9330166H04Rik
Downstream geneSlc27a6, Isoc1, Adamts19, A730017C20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468A12.T7 (MSMg01no468_a12.b1)MSMg01-468A12.TJ (MSMg01no468_a12.g1)
ACCAG551598AG551599
length789815
length of high quality
(start - end)
394 (47 - 440)127 (73 - 199)
definitionCHROMAT_FILE: MSMg01no468_a12.b1 PHD_FILE: MSMg01no468_a12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:04 2005CHROMAT_FILE: MSMg01no468_a12.g1 PHD_FILE: MSMg01no468_a12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAGAAAAATCTCCTCCGTTGTCTGTAAGGGTGATCCTTTCTGCTAA
GAACCTTTTGCTTGCTCTCATCTCAAGGCCACGTGAGGAACCCCTCTGTG
TTCTCCACTTACTTCACTGGCTCTCACTCCACACTGACAGCTCTGTGTAA
AGGCCGCGAAAACACACCAGCCGCTTTTGTTGCTGTTTTTTTTTTTTTCC
ACGTTACAGCTGTTTAGATCACTGACTGCACATCAAATAATTTTTACCGA
GCAACATGCATGAGGAGGCAGATGCCATAAGCACTCTGTTCTGATTTGAC
CATTTACATTAAAGCTGAGGAAACGCTCAGGCAGGAATGATCCCCATGAC
CAAAGACAGATTTGATTTACAGGGGAATAAAGGGACAACGGGCAGTGGGT
CCCTGCGGGAGGCATGTGGATTAACAAATGCGCGAAGATAGGTCAGTAAC
GACACTGGCCCTTCCGGAAGGTTCTTTCTGCCTGAAAACTCACCAATGCA
TTTGATGCCTTTTCCCACCCAGCCTTCTCTGCAGTTGTACTTGAATCTTC
TAGGGATATTCATAAATGAAGCGTGCATGGCCCAATTATGTTTTTCCATC
TTTACACTCCTCTCTGTTCTGAAATACTAGTTTGAATAAATATTTTTAAA
CACCATCTATCCATTTATCTGTATTATCTGTTCTTCCCCAACTTTGTTTT
CTCATACCATTATTATTTTTTATCCCCACCACTCTATTN
ATACAACNNNNAANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTCTGAAATACTCTGCCTGTTCAAGAAT
AANCTGTTTAATTTCCATGTGNNCTTATTGTTTCCAAAGTTTTGNNTGTT
TTCTAGCTGTATTCCATTGTGATCAAAAGGATATTCAACATGACTTCAAT
TATTGGTAAATTTGTTGAAACTTTCTTTGTGACCATCATATGGTCTGTCT
ATGAGAAGGTGGGGGGTGGTGGTGAGGGGGAGTGGGTGGGGATGTAGTGG
GATGGGGGCTTTNNNCNCNNANNNCNNNNNNNNCCNNNNNNCCCCNNNNN
CNNNNNNNNNNNNNNNNNNCCCCCCNNNCCCCCCNNNNNNNNNNCCCCCN
NNNCCNNNNNNNCNNNNCNCCCCCNNNNCCCCNNNCCCCNNNNCNNNNNN
NCCCNNNNCCNNNNNNNNCNNNNNNNCNNNNNNNNNNNCNNNNCNNNNNN
NNCNNCNCNNCNCNNNNNNCCNNNCCNNNNNNNCCNNNNNNNNCCNNNCC
CNNNNNNNNNNNNNNNNNCNNNNCNCCCCCNNCNNCCCNNNNNNNNNNNC
CCNCCNCCNNCCCCCNCNNNNNNNNCNNNNNCNNNNNCCCNNNCNNNCNC
NNNCCCCCCCNCCCCNCCCCCCNCNNCNNNNNNNNNCNNNNNCNNNNCNN
NNNNNNNNNCNNCCCCCCCCCCNCCCCNNNNNCCNNCNNCCCCCCCCCCC
CNNNNNNCCNNCCCCCCNNNCNCCCNNNNCCCNNNNNNNNCNNCCCCCCC
CCCCCCCGCGGCGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_a12.b1 MSMg01no468_a12.b1 CHROMAT_FILE:
MSMg01no468_a12.b1 PHD_FILE: MSMg01no468_a12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:04 2005
         (394 letters)



>mm_chr18_58224950_58225744
          Length = 795

 Score =  681 bits (352), Expect = 0.0
 Identities = 382/394 (96%), Gaps = 7/394 (1%)
 Strand = Plus / Plus

                                                                       
Query: 2   ggaattcaagaaaaatctcctc--cgttgtctgtaagggtgatcctttctgctaagaacc 59
           ||||||||||||||||||  ||  ||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaattcaagaaaaatct--tcagcgttgtctgtaagggtgatcctttctgctaagaacc 259

                                                                       
Query: 60  ttttgcttgctctcatctcaaggccacgtgaggaacccctctgtgttctccacttacttc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ttttgcttgctctcatctcaaggccacgtgaggaacccctctgtgttctccacttacttc 319

                                                                       
Query: 120 actggctctcactccacactgacagctctgtgtaaaggccgcgaaaacacaccagccgct 179
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 320 actggctctcactccacactgacagctctgtgtaaaggccgggaaaacacaccagccgtt 379

                                                                       
Query: 180 tttgttgctgtttttt--tttttttccacgttacagctgtttagatcactgactgcacat 237
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tttgttgctgttttttgttttttttccacgttacagctgtttagatcactgactgcacat 439

                                                                       
Query: 238 caaataatttttaccgagcaacatgcatgaggaggcagatgccataagcactctgttctg 297
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 440 caaataatttttaccgagcaacatgcatgaggaggcagatgcc-taagcactctgttgtg 498

                                                                       
Query: 298 atttgaccatttacattaaagctgaggaaacgctcaggcaggaatgatccccatgaccaa 357
           || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 499 atctgaccatttacattaaagctgaggaaacgctcaggcaggaatgatccccacgaccaa 558

                                             
Query: 358 agacagatttgatttacaggggaataaagggaca 391
           ||||||||||||||||||||||||||||||||||
Sbjct: 559 agacagatttgatttacaggggaataaagggaca 592


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 795
Length adjustment: 9
Effective length of query: 385
Effective length of database: 786
Effective search space:   302610
Effective search space used:   302610
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)