BAC Information

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BAC

Clone NameMSMg01-468C06
Chromosome18 (Build37)
Map Location 63,184,226 - 63,184,422
singlet/doubletsinglet
Overlap gene9430028L06Rik
Upstream geneAdrb2, Htr4, Fbxo38, Spink10, EG408198, 2700046A07Rik, Apcdd1, Napg
Downstream gene9030411M15Rik, LOC627792, Txnl1, Wdr7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468C06.T7 (MSMg01no468_c06.b1)MSMg01-468C06.TJ (MSMg01no468_c06.g1)
ACCAG551682AG551683
length822796
length of high quality
(start - end)
---197 (128 - 324)
definitionCHROMAT_FILE: MSMg01no468_c06.b1 PHD_FILE: MSMg01no468_c06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:14 2005CHROMAT_FILE: MSMg01no468_c06.g1 PHD_FILE: MSMg01no468_c06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAAATCCGGGGAA
NACCTGCATAGATTCCCCCAGAAGAAAGAAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGGAGGAGCAGCATGGAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGAAGCAGAAGCAGAAGCTGAAGCAGAAGCAGAAGCAGAAGCTGAAGC
AGTAGGAGCAGCAGGAGCAGCAGGAGCGTGCAGGAGCCGCAGCCACAGCA
GCAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCTGAAGCAGC
AGGAGGAGCAGGAGGAGCAGGAGCAGCAGGAGCTGTTGGAGCAGCAGGAG
CAGCAGCAACCGCAGCAGCAGCAGCTGCTGCAGAAGCAGCAGTTGCAGCA
GCAGAAGCTTTTAACCTTAGATTTTTTTTCCCGCTTCTCCTTCTATGTTC
CCTGTGTTATCCCTCTCTAGTTAATTTTGTTAACTATTGCGAACGTTCCT
ACGTATATAATTATTTTCTAGAATATTCTTAATGTCCTATTTTTATCTCT
CATGCTACGTTTCTATTAGTGTTTATTTGTTAAATTATTATTACCTGCCT
TGTCTTTTTTTATCTACCCTACTTATGTGTCTATATGTCTTCTCTCATTA
TTTCTATTTTTATTTACCCAGCTTCTTTTTCTCAATTTTCCTCTTTTTTC
TCCTCTTTATTTTGTTTTTAACCTCCTCACTTTCTTATTATATCCCCTCC
CCTTATCCTTGGTCGTGATTATTTTGTGGTGCTCCCTCTATCTTATTTTC
TGATTCCCGTTCCTCCCCTGTT
GATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTCGAATTCAGTTAACAGTAATTTAATGTAATCACC
GTCTTAACAACTTCATGATGATCGACGATGCTCCAGTCACAGAATTAAGG
CTTTTTTTTTTCTTTTTTGTTATATTTTCAATTTGGGAGTAATCCACTTG
GTAGAGAATTCTTCAGAATTATCCTAAGGAGTAGAGGGGACATTTATGTG
TCTTCTGTTTTGAGCTGTTGACTTCTGTATAAGGAAATACGCCATGCCTT
CACCTTCTGTAATTCTGCCTTTTATTTATCNTTGCCAGAACCTGGTGGCA
CAGCTTTGGTACTTTGTGAAGTGCGTGTACTTTGGGCTGTCTGCCTATCA
AATCCGCTGTGCCTACCCAACCCGTGTGCTCGGGAACTTCCTCACAAAGA
GCTACAATTACGTCTACCTCTTCTTGCTTCAAGGGCGAGGACACTGTTCT
TGCCTGTCCCCCGTGCAGGTGACGACATGGCATATTGTTGTGTGTCTCTC
TCTAGCGATCTCCGTTTTACTGTTCCCTGACCTTCTTATCATTGTTTCCT
CTCTAATTGATTATCTTCTATGTCTATTTTCTCATTTTTCTCCCTACTTT
TTATCTCTTACCCGACCAAAAATTCTTCTTTTTTATTCTGGAACCTCTTC
TTACTTTTATTCCCATTATATTTCATTCTTTTTACTCTATTCTTCTCTTT
TTATCCCTTTTTTTTTTTTTTATCTCTTTCTTTTTCCTCTCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_c06.g1 MSMg01no468_c06.g1 CHROMAT_FILE:
MSMg01no468_c06.g1 PHD_FILE: MSMg01no468_c06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:14 2005
         (197 letters)



>mm_chr18_63184026_63184622
          Length = 597

 Score =  373 bits (193), Expect = e-108
 Identities = 196/197 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgctccagtcacagaattaaggcttttttttttcttttttgttatattttcaatttggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 atgctccagtcacagaattaaggcttttttttttcttttttgttatattttcaatttggg 338

                                                                       
Query: 61  agtaatccacttggtagagaattcttcagaattatcctaaggagtagaggggacatttat 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 agtaatccactcggtagagaattcttcagaattatcctaaggagtagaggggacatttat 278

                                                                       
Query: 121 gtgtcttctgttttgagctgttgacttctgtataaggaaatacgccatgccttcaccttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gtgtcttctgttttgagctgttgacttctgtataaggaaatacgccatgccttcaccttc 218

                            
Query: 181 tgtaattctgcctttta 197
           |||||||||||||||||
Sbjct: 217 tgtaattctgcctttta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 197
Length of database: 597
Length adjustment: 8
Effective length of query: 189
Effective length of database: 589
Effective search space:   111321
Effective search space used:   111321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)