Query= MSMg01no468_i08.b1 MSMg01no468_i08.b1 CHROMAT_FILE:
MSMg01no468_i08.b1 PHD_FILE: MSMg01no468_i08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:46 2005
(476 letters)
>mm_chr18_58929149_58930023
Length = 875
Score = 768 bits (397), Expect = 0.0
Identities = 456/485 (94%), Gaps = 22/485 (4%)
Strand = Plus / Plus
Query: 7 gaattcacctttaa---ttttcgacttaaaggggcatttttcctcttttccttccaattt 63
|||||||||||||| || || |||||| |||||||||||||||||||||||| |||
Sbjct: 207 gaattcacctttaaaaatt---gagttaaagaggcatttttcctcttttccttcca-ttt 262
Query: 64 gggtttaattaagacataactactataaagagaaagccagagggaacagccataggtaat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gggtttaattaagacataactactataaagagaaagccagagggaacagccataggtaat 322
Query: 124 ccccatcagcatctatcatgccccagctcctgacagtgccagtcttctgcaagatttgaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ccccatcagcatctatcatgccccagctcctgacagtgccagtcttctgcaagatttgaa 382
Query: 184 ccacagcaggtggggcttccccagctccttctcacttcttgtttcgacacactcagcatc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ccacagcaggtggggcttccccagctccttctcacttcttgtttcgacacactcagcatc 442
Query: 244 agtctctcacagaagtgtttttctttgtgtttatggtgaattcatttcaaacactgttgt 303
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 443 agtctctcacagaagtgtttttctttgtgtttatggtgaattcatttcgaacactgttgt 502
Query: 304 aatcaacacccatgaatacttcaataatatggtacaactcagaggtagacccatagataa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aatcaacacccatgaatacttcaataatatggtacaactcagaggtagacccatagataa 562
Query: 364 aagcagttgtgtgtat--ataatgctctgctttaaaaaaga-atataattagattctata 420
|||||||||| || ||||||||||||||||||||| | ||||||||| ||||||||
Sbjct: 563 gggcagttgtgt--atgcataatgctctgctttaaaaaa-atatataattatattctata 619
Query: 421 ta---------caattatatataaatttatatataataaaaacatttcttccctccatgc 471
|| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 620 tattctagatacaattatatataaatttatatataataataacatttcttccctccatgc 679
Query: 472 ccttc 476
|||||
Sbjct: 680 ccttc 684
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 875
Length adjustment: 10
Effective length of query: 466
Effective length of database: 865
Effective search space: 403090
Effective search space used: 403090
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no468_i08.g1 MSMg01no468_i08.g1 CHROMAT_FILE:
MSMg01no468_i08.g1 PHD_FILE: MSMg01no468_i08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:46 2005
(409 letters)
>mm_chr18_59109217_59110027
Length = 811
Score = 598 bits (309), Expect = e-175
Identities = 388/421 (92%), Gaps = 12/421 (2%)
Strand = Plus / Minus
Query: 1 taatattgaagaggcagaaagagaaaggtttgtttaataatgcaacatttccaacaatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 taatattgaagaggcagaaagagaaaggtttgtttaataatgcaacatttccaacaatgg 497
Query: 61 tatggtagt--aatattctatttcctcagcctttgatcaagatctaaaataaagttttgt 118
||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 496 tatggtagtgcaatattctatttcctcaggctttgatcaagatctaagataaagttttgt 437
Query: 119 aatgaaaacttactagaacatttatactgtagtttaaactataaagttagaattttaatc 178
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 436 aatgaaaacttacaagaacatttatactgtagtttaaactatgaagttagaattttaatc 377
Query: 179 aaagttattctgtgtgattatttttttacttgttctaaaagaaaaatgaaaatttgatat 238
|||||||||||| ||| ||| || |||||||||||||||||||||||||||| ||||
Sbjct: 376 aaagttattctgggtggttacaattaaacttgttctaaaagaaaaatgaaaatttaatat 317
Query: 239 gaaatactcccatataaattaaatatttgaataaactgtattatgacaatagatttagaa 298
||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 316 aaaatattaaaatataaattaaatatttgaataaaatgtattatgacaatagatttagaa 257
Query: 299 aggggaagctagcacacaggtaataaatctcatctctatcctgtaaaaataagaag---- 354
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 256 agaggaagctagcacacgggtaataaatctcatctctatcctgtaaaaataagaagacag 197
Query: 355 ------gtataataactttagctatgatcactttgattaaataaaactaaggcatgacta 408
||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 196 tattaggtataataactttagctatgatcactttgattaaataaaactaagacatgacta 137
Query: 409 t 409
|
Sbjct: 136 t 136
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 811
Length adjustment: 9
Effective length of query: 400
Effective length of database: 802
Effective search space: 320800
Effective search space used: 320800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
