BAC Information

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BAC

Clone NameMSMg01-469G21
Chromosome18 (Build37)
Map Location 40,467,676 - 40,467,925
singlet/doubletsinglet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469G21.T7 (MSMg01no469_g21.b1)MSMg01-469G21.TJ (MSMg01no469_g21.g1)
ACCAG552668AG552669
length783805
length of high quality
(start - end)		529 (44 - 572)483 (73 - 555)
definitionCHROMAT_FILE: MSMg01no469_g21.b1 PHD_FILE: MSMg01no469_g21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:01 2005CHROMAT_FILE: MSMg01no469_g21.g1 PHD_FILE: MSMg01no469_g21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:01 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTGAACTCTCCGTCCTTTCAGGTCCACATTTGCTCTGGCTCTGGCA
ACTGACTGAACCAAACAATTAGGCTCATACCTAGAACTTTGGAAATGGTA
ATGGAGTTGATAACACACCCTAACAGAAAGAGGAATGCTCCACTCACTAG
TACACTTTCACTAGAAGCCTCACCCTGTCAGCAGTTTAGGAATTTGTAAA
GCCAATCTGGACAATATTTAAATGGTTTGGAATTTCTACTTCATGTTTTT
TTTTTTTTTTTAGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGC
ACATTGGATTTTATAACAGACTTTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTAATACTTCTCCTGTGATTGCCGTAACTTGCAATCTAGTGGGCTTAT
GTTTGATTCCTGTAATCTTTTTTTCTAATTCTTTTTCCTTTTTATATTTT
ATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTT
ATTTTATTTTATTTTATTTTATTTTAATTTAANNAANTNNANTTNNNNNN
NNNTNNNNNNNNNNNNNTNTNNNNTTNTTTTTTTTTTNTTTTTTTTTTTT
TTTTTNNTTTTTTTTTTTTTTTTTTTNNTTTNTNNNNTTTTTTTTTTTTT
TTTTTTTTNTNTTTTTTTTTTTTTNNTTTTTNNNTTTNNTNTTTTTNTTT
TNNNTTTTTTTNTTNTTTTTTTTTTTTTTTTNT

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTAGGAACATGTCCTTGTTGTATACTT
ATCCTGCTCCCATTAATTGGGGTACTCTACTGTGGCAAGGGTACTTGCCA
TGTCTTAACTTGAAAACCAGAAAGTCAGTTGTGCATGTACAAGTCTCTTT
CTTCCAAGTAAGATGTCAGTTCCCAGGGAGGCCTCGAGAACTTATACTTT
ACTCACTCACACCCTACTCAAAATAGAAGTCTGGTTCGAAGTAGTCTCTG
CACTGAATCGGTGGTGCGGGTGTCTCTCTTTTGTTGGGGTGCGGGGGTCC
GTCCCCAGGGCAGCTTCTAAGAGCAAATGCCAGAAAAGTGTATACATGGG
TTTGTGCAGGAAATGCTGCTGGGTGGTCAGTTTGGGTCCAAGCCTATTGC
AGATAACTATAGAACAAAGGAAGCTTCTATTCTGATTGGTTTCCGAGGAC
ACATCCAACAAGAATATGTAGTCAATTCTGGCAATAATGGCAGAAACAAG
CTATGAGAAAGTGTCCTTATAATAGTAGNTAACAGCACAAAATGGCAGGC
TAGTCCAGGTAAGAAGGTACCTAGGCCTTATCTAATCTGAAGTAGGCCTT
CAATTCCCTCCAGGCCTTAATATTTTTACTATAACTTAAAAGCCCCCAGT
TTTTGCCCTCTGAAACCTTCTCAAATGGAAGGTTCCAAAAAAATGAAAAT
ACTTCTCCCGCCTTCTCTTTATTTATGAAAAAAAAAATTCTCTTATCATT
GGGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_g21.b1 MSMg01no469_g21.b1 CHROMAT_FILE:
MSMg01no469_g21.b1 PHD_FILE: MSMg01no469_g21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:01 2005
         (529 letters)



>mm_chr18_40467472_40468399
          Length = 928

 Score =  362 bits (187), Expect = e-104
 Identities = 235/251 (93%), Gaps = 1/251 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgaactctccgtcctttcaggtccacatttgctctggctctggcaactgact 64
           ||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 454 gaattctctgaactcactgtcctttcaggtccacctttgctctggctctggcaactgact 395

                                                                       
Query: 65  gaaccaaacaattaggctcatacctagaactttggaaatggtaatggagttgataacaca 124
           ||||||||||| |||||||||||||||| ||| | |||||||||||||||||| ||||||
Sbjct: 394 gaaccaaacaa-taggctcatacctagatcttcgaaaatggtaatggagttgaaaacaca 336

                                                                       
Query: 125 ccctaacagaaagaggaatgctccactcactagtacactttcactagaagcctcaccctg 184
           | |||||||||||||||| |||||||||||||| | |||||||||||||||||| |||||
Sbjct: 335 ctctaacagaaagaggaaggctccactcactagaagactttcactagaagcctcgccctg 276

                                                                       
Query: 185 tcagcagtttaggaatttgtaaagccaatctggacaatatttaaatggtttggaatttct 244
            |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 275 ccagcagtttaggaatttgtaaagccaatctggacaatatttacatgatttggaatttct 216

                      
Query: 245 acttcatgttt 255
           |||||||||||
Sbjct: 215 acttcatgttt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 928
Length adjustment: 10
Effective length of query: 519
Effective length of database: 918
Effective search space:   476442
Effective search space used:   476442
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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