Query= MSMg01no471_k18.b1 MSMg01no471_k18.b1 CHROMAT_FILE:
MSMg01no471_k18.b1 PHD_FILE: MSMg01no471_k18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:00 2005
(584 letters)
>mm_chr18_51722763_51723746
Length = 984
Score = 948 bits (490), Expect = 0.0
Identities = 548/568 (96%), Gaps = 5/568 (0%)
Strand = Plus / Plus
Query: 5 gaattcaatgtatatctaaatgagcactttcagaatgcagaagcttccaacaagaagtct 64
|||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatgaaaatttaaatgagcactttcagaatgcagaagcttccaacaagaagtct 264
Query: 65 gtaggggattaagcttaaatctatgcagtgttttgtagagataatatggtggaaacattt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 265 gtaggggattaagcttaaatctatgcagtgttttgtagagataatatggtggagacattt 324
Query: 125 caagtcagagacgtggtggtgtgtcctcatttcttaccccacctttgtcaggatttgcta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caagtcagagacgtggtggtgtgtcctcatttcttaccccacctttgtcaggatttgcta 384
Query: 185 gtgattagttgatggttctgcttcacttttgcttcgtgggcctacatccctaattctctc 244
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 385 gtgattagttgatggttctgcttcacttttgcttcatgggcctacatccctaattctct- 443
Query: 245 tttttttttataattacggtttatttgtaagctgtaccttttaataagacagatgaatca 304
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tttttttttataattaaggtttatttgtaagctgtaccttttaataagacagatgaatca 503
Query: 305 cttgtaaatcaaaagcaattttggcacttatagatgctactttgcccacatttttctcct 364
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 504 cttgtaaatcaaaagcaattttggtacttatatatgctactttgcccacatttttctcct 563
Query: 365 ttttaataaaaacaacaattttctgaacacatcaaagaaattcctaacaatttagggt-t 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 564 ttttaataaaaacaacaattttctgaacacatcaaagaaattcctaacaatttagggagt 623
Query: 424 ggggaatctgtgctagcatattggtttgagcctgagaacatagctcagtttgtgtggtgc 483
||| ||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||
Sbjct: 624 gggaaatctgtgctagcatatcggtttgagcccgagaacgtagctcagtttgtgtggtgc 683
Query: 484 ttgcctagcatgggtgacgcccagtgagtcctcagcattccatgatcaggcatggtagtg 543
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttgcctagcatgggtgacgctcagtgagtcctcagcattccatgatcaggcatggtagtg 743
Query: 544 tcactacaatgtcggcatctgggagggg 571
|||||||||| | ||||||||| ||||
Sbjct: 744 tcactacaat--cagcatctggg-gggg 768
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no471_k18.g1 MSMg01no471_k18.g1 CHROMAT_FILE:
MSMg01no471_k18.g1 PHD_FILE: MSMg01no471_k18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:00 2005
(628 letters)
>mm_chr18_51892286_51893313
Length = 1028
Score = 1172 bits (606), Expect = 0.0
Identities = 622/628 (99%), Gaps = 2/628 (0%)
Strand = Plus / Minus
Query: 1 agaagactaaaatgtaatataaaatttttcttaaataattgtaatatacactggaaaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 agaagactaaaatgtaatataaaatttttcttaaataattgtaatatacactggaaaaat 568
Query: 61 tatgtctataaataagttatctacacttagtggaaagtcccagtgaagacaatgtgtaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tatgtctataaataagttatctacacttagtggaaagtcccagtgaagacaatgtgtaaa 508
Query: 121 gaaaatagttttgttttgtttcagggaaatctcttgccaatttcagctgataattaggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gaaaatagttttgttttgtttcagggaaatctcttgccaatttcagctgataattaggaa 448
Query: 181 ttaaaataaaatgagaaacaatttagaatggacaaaaatgtgtcattaaatcatctcata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ttaaaataaaatgagaaacaatttagaatggacaaaaatgtgtcattaaatcatctcata 388
Query: 241 attccactagaggtaaacaaaaattaatattaggttgcacatgaataaaatattatgatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 attccactagaggtaaacaaaaattaatattaggttgcacatgaataaaatattatgatt 328
Query: 301 acttgtacagaaatataacagtatcatgaaattcacattttcattaaggattagataatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 327 acttgtacagaaatataacagtatcatgaaattcacattttcattaaggattaaataatg 268
Query: 361 aatttcagggacctgtgagaaggctcagtggaaaaatttcttgcaggaaattaataaagg 420
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aatttcagggacctgtgagatggctcagtggaaaaatttcttgcaggaaattaataaagg 208
Query: 421 ggaacataaaattgtctccataaagttgttctttgacctacacatgtgtagcatggtatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ggaacataaaattgtctccataaagttgttctttgacctacacatgtgtagcatggtatg 148
Query: 481 tttgcacacgtgtgcgcgcacacacacacacatacactaaaaaatttaaaagtactcaag 540
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 147 tttgcacacgtg--cgcgcacacacacacacatacactaaaaaattcaaaagtactcaag 90
Query: 541 ctcaaagttcttttcaattttatagacaaagtatctactatttggaatttaagtactata 600
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 89 ctcaaagttcttttcaattttatagacaaagtgtctactatttggaatttaagtactata 30
Query: 601 attctaatacaagcaaaacaaatttaat 628
||||||||||||||||||||||||||||
Sbjct: 29 attctaatacaagcaaaacaaatttaat 2
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space: 629124
Effective search space used: 629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
