BAC Information

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BAC

Clone NameMSMg01-472E19
Chromosome18 (Build37)
Map Location 82,929,405 - 83,123,944
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040871, B020010K11Rik, Galr1, Mbp, EG637748, Zfp236, LOC100039563
Downstream geneZfp516, LOC100041001, 4921531P14Rik, LOC665284
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472E19.T7 (MSMg01no472_e19.b1)MSMg01-472E19.TJ (MSMg01no472_e19.g1)
ACCAG554866AG554867
length732772
length of high quality
(start - end)		473 (71 - 543)415 (79 - 493)
definitionCHROMAT_FILE: MSMg01no472_e19.b1 PHD_FILE: MSMg01no472_e19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:53 2005CHROMAT_FILE: MSMg01no472_e19.g1 PHD_FILE: MSMg01no472_e19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,929,405 - 82,929,877)(83,123,530 - 83,123,944)
sequence
NNGGGTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCAACTTCACATGTGCTATGGACACACAAAATAAATAAAAG
GAAGACAGGAAAGCCTGGTAGCGGCCCAAACATGCTTTGGGCATCTAGAG
AGAGACTCCCGTGGTCTCTTTACAGGTAGAACACTCTTTTTGCTTTTATA
GAGATCGCAAATAGGTAAGCGAACATGGTCAAAAGCAGAAATATGAGAAA
TCAAAGCCACTGCTTAGAAAGGTGAGAAATTCAGCCGCCTGGACCTGGGG
AGCACGAGCATGGATGGTCCCAAGGCCTGCTGCCCCCTGTGTCCTCCCGT
TAGGAGACACACAGCACACCGTGGACTCTGGCTGGCCTGGATCATTGTAT
CAACTGAGTGAGGTGGGTGAGGCAATGCCTACTGCTGAGTGGGTGGGTGG
GTCTCTGTAGTGAGGCCATGGTGTTTGCCCTCTCTTCATGGACTTCAGGG
AGAAGGACACACGAGATTAAGACTAGCCACGTGTATGTGAGCAGACCTTC
CCCAGAGCCAGCCGGGTCCATGAACTCAGGAGCCCAACACACTATTGCCT
TTAAAACAGAGATTTAAAGTCTGATGTGGAGGGGGCCAAGATTACTATCC
CATTTTTACCATGCCCCCCAACCCCCCAAAGACCCTTTGCTCTTTTAAAA
GGGGGGGCCATGGTCCAAATACCCTGCTTTTG

NTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACATGTTCAGAACTGTACAAAA
TACAAAGAAGCTACGTGCCTAGTTTTTTGTTTTGGTCTAGCAGTGTGCTC
ACACCTGTCTTAATCAAACACATAAGGGTCTGTCTCTTCCTAGAGAGCCA
TAGGTCCCAGCTCCTTGTGTGCTCTGGGTATCCCCTGAACCTATTCACTG
CAGTGAGCCAGGAAAGAAACCATCAGCCAGCAGGGGGAGCACTGCTGCCA
GCACTGGGTATGGCAGGCGTCCTGCAAGCATCCTCTCAGGAACTGCGTAT
TCTGAGTGCTGCGTGACCACAAACACGCCACAAGGTAGAAATCTGAAAGT
GACCTTGAAACACACATGGAGCTGGGGAAAGACCCCAGACCACCCAGGGC
TGGCAGGAGCCATGAGATGGACTGGGACAAGACTGCCTGCCACAGAACAG
CTGTTGCTTCTGTTGGAAGGGCTTTCCCTTCCAGAGGCTGCTGTCATAGA
ACATGCTTAAGCAGGCCGGGGAGAGAGAAACTCCCTATAGGTTTCTTAGG
AACCCTAATTGTACCAGCCAGGTCAGTTTGAATAACGCCCCTCTAAGGGT
CCCCTTAAATTTATAAGGACAACTTGGCATTCCCGTTAAATTATGGCCCC
CTTTCGTTCTTTTAGAACAATCGGAGTAGCAAAATGTTAGTCCATGTTTT
CGTTTCCTTCTTACTTATACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_e19.b1 MSMg01no472_e19.b1 CHROMAT_FILE:
MSMg01no472_e19.b1 PHD_FILE: MSMg01no472_e19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:53 2005
         (473 letters)



>mm_chr18_82929205_82930077
          Length = 873

 Score =  891 bits (461), Expect = 0.0
 Identities = 470/473 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgctatggacacacaaaataaataaaaggaagacaggaaagcctggtagcggcccaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgctatggacacacaaaataaataaaaggaagacaggaaagcctggtagcggcccaaa 260

                                                                       
Query: 61  catgctttgggcatctagagagagactcccgtggtctctttacaggtagaacactctttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgctttgggcatctagagagagactcccgtggtctctttacaggtagaacactctttt 320

                                                                       
Query: 121 tgcttttatagagatcgcaaataggtaagcgaacatggtcaaaagcagaaatatgagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcttttatagagatcgcaaataggtaagcgaacatggtcaaaagcagaaatatgagaaa 380

                                                                       
Query: 181 tcaaagccactgcttagaaaggtgagaaattcagccgcctggacctggggagcacgagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaaagccactgcttagaaaggtgagaaattcagccgcctggacctggggagcacgagca 440

                                                                       
Query: 241 tggatggtcccaaggcctgctgccccctgtgtcctcccgttaggagacacacagcacacc 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggatggccccaaggcctgctgccccctgtgtcctcccgttaggagacacacagcacacc 500

                                                                       
Query: 301 gtggactctggctggcctggatcattgtatcaactgagtgaggtgggtgaggcaatgcct 360
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 gtggactctggctggcctggatcattgcatcaactgagtgaggtgggtgaggcaatgcct 560

                                                                       
Query: 361 actgctgagtgggtgggtgggtctctgtagtgaggccatggtgtttgccctctcttcatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actgctgagtgggtgggtgggtctctgtagtgaggccatggtgtttgccctctcttcatg 620

                                                                
Query: 421 gacttcagggagaaggacacacgagattaagactagccacgtgtatgtgagca 473
           |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 621 gacttcagggagaaggacacacaagattaagactagccacgtgtatgtgagca 673


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no472_e19.g1 MSMg01no472_e19.g1 CHROMAT_FILE:
MSMg01no472_e19.g1 PHD_FILE: MSMg01no472_e19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:53 2005
         (415 letters)



>mm_chr18_83123330_83124144
          Length = 815

 Score =  787 bits (407), Expect = 0.0
 Identities = 413/415 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatgttcagaactgtacaaaatacaaagaagctacgtgcctagttttttgttttggtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 acatgttcagaactgtacaaaatacaaagaagctacgtgcctagttttttgttttggtct 556

                                                                       
Query: 61  agcagtgtgctcacacctgtcttaatcaaacacataagggtctgtctcttcctagagagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 agcagtgtgctcacacctgtcttaatcaaacacataagggtctgtctcttcctagagagc 496

                                                                       
Query: 121 cataggtcccagctccttgtgtgctctgggtatcccctgaacctattcactgcagtgagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 cataggtcccagctccttgtgtgctctgggtatcccctgaacctattcactgcagtgagc 436

                                                                       
Query: 181 caggaaagaaaccatcagccagcagggggagcactgctgccagcactgggtatggcaggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 caggaaagaaaccatcagccagcagggggagcactgctgccagcactgggtatggcaggc 376

                                                                       
Query: 241 gtcctgcaagcatcctctcaggaactgcgtattctgagtgctgcgtgaccacaaacacgc 300
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 375 gtcctgcaagcatcctctcaggaactgcgtattctgaatgctgcgtgaccacaaacacgc 316

                                                                       
Query: 301 cacaaggtagaaatctgaaagtgaccttgaaacacacatggagctggggaaagaccccag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cacaaggtagaaatctgaaagtgaccttgaaacacacatggagctggggaaagaccccag 256

                                                                  
Query: 361 accacccagggctggcaggagccatgagatggactgggacaagactgcctgccac 415
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 255 accacccagggctggcaggagccgtgagatggactgggacaagactgcctgccac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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