Query= MSMg01no472_l03.b1 MSMg01no472_l03.b1 CHROMAT_FILE:
MSMg01no472_l03.b1 PHD_FILE: MSMg01no472_l03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:25 2005
(542 letters)
>mm_chr18_89896099_89897040
Length = 942
Score = 1033 bits (534), Expect = 0.0
Identities = 537/538 (99%)
Strand = Plus / Plus
Query: 5 gaattctctttttttctgccttataaaacttggaacattcctccaagaatccacagactt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctttttttctgccttataaaacttggaacattcctccaagaatccacagactt 264
Query: 65 tttagtttaccagaccatccattgaattcaatgcattctaagtggaaggaaaggttcatt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttagtttaccagaccatccattgaattcaatgcattctaagtggaaggaaaggttcatt 324
Query: 125 tcttactgtcattacatctctaccagagtgctgggcttaagtatttaatagataaataat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcttactgtcattacatctctaccagagtgctgggcttaagtatttaatagataaataat 384
Query: 185 aatgtagactttaaaagcaaaagatattgaagggtgggaacaacctaaggctaagaactg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatgtagactttaaaagcaaaagatattgaagggtgggaacaacctaaggctaagaactg 444
Query: 245 gcagatgaaaaactataaagactggtttctggagctcagtgtgccacagttcttaagaac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcagatgaaaaactataaagactggtttctggagctcagtgtgccacagttcttaagaac 504
Query: 305 atgacagctctaaaactctccaacatatagacacagggatctaatgaaggtcagcttctc 364
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 505 atgacagctctaaaactctccaacatgtagacacagggatctaatgaaggtcagcttctc 564
Query: 365 ttccaacaatactaccttcttcatacccatacacatgtaattcccaagactagtcacaga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttccaacaatactaccttcttcatacccatacacatgtaattcccaagactagtcacaga 624
Query: 425 aaaccgtccacctgcagtctttcaggtatattcagcattgggacacaacaagctccttgc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaaccgtccacctgcagtctttcaggtatattcagcattgggacacaacaagctccttgc 684
Query: 485 attttaattgggctccaatcccatcattagggcaaaaattattttcctttgatctcca 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 attttaattgggctccaatcccatcattagggcaaaaattattttcctttgatctcca 742
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space: 495824
Effective search space used: 495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no472_l03.g1 MSMg01no472_l03.g1 CHROMAT_FILE:
MSMg01no472_l03.g1 PHD_FILE: MSMg01no472_l03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:25 2005
(572 letters)
>mm_chr18_90072551_90073525
Length = 975
Score = 1089 bits (563), Expect = 0.0
Identities = 571/575 (99%), Gaps = 3/575 (0%)
Strand = Plus / Minus
Query: 1 acagatgttatttcaattaccacatttaagaaccattcttctaagaatatgagcttaagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 acagatgttatttcaattaccacatttaagaaccattcttctaagaatatgagcttaagt 716
Query: 61 acaggagtggaagcagagtgctgacctgtcatgttctgtaatcacatgtcagaagagagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 acaggagtggaagcagagtgctgacctgtcatgttctgtaatcacatgtcagaagagagg 656
Query: 121 tagaaacagtgtcagtgtgtcaggaagaagtggattctgtatgtcagtagcaggacagca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 tagaaacagtgtcagtgtgtcaggaagaagtggattctgtatgtcagtagcaggacagca 596
Query: 181 aaatgcagccctgggacaggagccaagaaacacaagcagaggccacaactgcagcctttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 aaatgcagccctgggacaggagccaagaaacacaagcagaggccacaactgcagcctttc 536
Query: 241 agcttatgtgacataagaaaggttggaaacagaaagtcaaggagctagcctgaactactg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 agcttatgtgacataagaaaggttggaaacagaaagtcaaggagctagcctgaactactg 476
Query: 301 ccgggggcaaaagaaaaaggagaag---aaaaaaaatgcagcctttggatgtttcaagca 357
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 475 ccgggggcaaaagaaaaaggagaagaaaaaaaaaaatgcagcctttggatgtttcaagca 416
Query: 358 gactccctggtgctcacttaggattcataacttgattgtggaaagatgtgaaggtcgaat 417
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 415 gactccctggtgctcacttaggattcatgacttgattgtggaaagatgtgaaggtcgaat 356
Query: 418 atcatgcataatttacagaatgtagttcgtttataagtaaaccaataattgtaagaacag 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 atcatgcataatttacagaatgtagttcgtttataagtaaaccaataattgtaagaacag 296
Query: 478 tttcattatttttatataaatggaagaactagacaatattgcattatatactgcaatgaa 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 tttcattatttttatataaatggaagaactagacaatattgcattatatactgcaatgaa 236
Query: 538 attatgaaaatcaggcactgtgtagggaaagtaaa 572
|||||||||||||||||||||||||||||||||||
Sbjct: 235 attatgaaaatcaggcactgtgtagggaaagtaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 975
Length adjustment: 10
Effective length of query: 562
Effective length of database: 965
Effective search space: 542330
Effective search space used: 542330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
