Query= MSMg01no472_m23.b1 MSMg01no472_m23.b1 CHROMAT_FILE:
MSMg01no472_m23.b1 PHD_FILE: MSMg01no472_m23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:34 2005
(239 letters)
>mm_chr18_55558802_55559439
Length = 638
Score = 420 bits (217), Expect = e-122
Identities = 233/239 (97%), Gaps = 3/239 (1%)
Strand = Plus / Plus
Query: 1 tcacagtctactgcattgatttccactaactttataagggattagatgctgcaatgaaac 60
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 tcacagtctactgcattggtttccactaactctataagggattagatgctgcaatgaaac 260
Query: 61 ctttcatctttcatctcttgcaggtctcagatggtgctctttgaatggaccattaattct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttcatctttcatctcttgcaggtctcagatggtgctctttgaatggaccattaattct 320
Query: 121 gggttcttctgatgaagtccattctgcctccgtcatttttttttaaaaagtcattcttct 180
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 321 gggttcttctgatgaagtccattcttcctccgtcatttttttt--aaaagtcattcttct 378
Query: 181 ctcatatattacattctgacca-agttcccccctccctcattccctgccagtccaccca 238
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 379 ctcatatattacattctgaccacagttcccccctccctcattccctgccagtccaccca 437
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 638
Length adjustment: 9
Effective length of query: 230
Effective length of database: 629
Effective search space: 144670
Effective search space used: 144670
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no472_m23.g1 MSMg01no472_m23.g1 CHROMAT_FILE:
MSMg01no472_m23.g1 PHD_FILE: MSMg01no472_m23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:34 2005
(415 letters)
>mm_chr18_55787978_55788792
Length = 815
Score = 803 bits (415), Expect = 0.0
Identities = 415/415 (100%)
Strand = Plus / Minus
Query: 1 ttaccctccaaacagaaaaatgataagaaataaattaaaaacaaatttcaaaaggcaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 ttaccctccaaacagaaaaatgataagaaataaattaaaaacaaatttcaaaaggcaaat 650
Query: 61 taataaaaaatacattattattaaaatttttaatcttggagatgttgagggctcttgagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 taataaaaaatacattattattaaaatttttaatcttggagatgttgagggctcttgagt 590
Query: 121 gattctagtttacatttaaaatggctatgcctcttttcctttgtttttaattaagaagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 gattctagtttacatttaaaatggctatgcctcttttcctttgtttttaattaagaagaa 530
Query: 181 aaaaaacctggccaacaagtttcacaggaacattataaaatttgaacacttgtaggttgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 aaaaaacctggccaacaagtttcacaggaacattataaaatttgaacacttgtaggttgg 470
Query: 241 tgttatcagtacaaatggtgcagacactttgatagttcgttttccatcaccatgagctaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 tgttatcagtacaaatggtgcagacactttgatagttcgttttccatcaccatgagctaa 410
Query: 301 tgatgagactgggaaactataaaaataagaggcttacttagctcacattttgggagactg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tgatgagactgggaaactataaaaataagaggcttacttagctcacattttgggagactg 350
Query: 361 aaaatccacacaggatgcagtgtcagctctggtgtgtggaccacagcacctcact 415
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 aaaatccacacaggatgcagtgtcagctctggtgtgtggaccacagcacctcact 295
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space: 327236
Effective search space used: 327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
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