BAC Information

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BAC

Clone NameMSMg01-472P10
Chromosome18 (Build37)
Map Location 68,431,396 - 68,431,631
singlet/doubletsinglet
Overlap gene4933403F05Rik
Upstream geneImpa2, B430212C06Rik, Cidea, Tubb6, Afg3l2, Slmo1, Spire1, Cep76, Tnfsf5ip1, Ptpn2, Seh1l, LOC667939, D18Ertd653e
Downstream geneRnmt, Mc5r, Mc2r, LOC100043380, EG225681
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472P10.T7 (MSMg01no472_p10.b1)MSMg01-472P10.TJ (MSMg01no472_p10.g1)
ACCAG555374AG555375
length763759
length of high quality
(start - end)
482 (72 - 553)240 (78 - 317)
definitionCHROMAT_FILE: MSMg01no472_p10.b1 PHD_FILE: MSMg01no472_p10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:47 2005CHROMAT_FILE: MSMg01no472_p10.g1 PHD_FILE: MSMg01no472_p10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAGAGGATCCGCG
GAATTCTCATTACCCGAAACCAAATAGCTGAGAAGCACCTGAAAAAATGT
TCAACATCCTTAATCATCAGGAAAATGCAAATCAAAACAACCCTGATCAC
ACCAGTCAGAATGACAAGATCAAAAATTCAGGTGACATCAGATGCTGGCG
AGGATGTGGAGAAAGAGGAACACTCCTCCACTGCTGGTGGGATTGCAAGC
TTGTACAACTACTCTGGAAGTCAGTCTGGAGGTTCCTCAGAAAATTGGAC
ATAATACTACCGTATTTTTCAGCAATACCTCCCCTGGGCATATACCCAGA
AGTTCCAACTGGTAATAAGAACACATGCTCCACTATGTTCATTGCAGCCG
TATTTATAATAGCCTGAAGCTGGAAAGAACCCAGATGTCCCTCAACAAAA
GAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACTACTCAGC
TATTAAAAACAATGGATTTATTAAATTCTTGGACAAATGGATGTATCTGG
AGGATATCATCCTTAGTGAGGTAACCCAATCACAAAAGAAGTCATTAAAT
ATGCACTCCCTGAGAAGTGTATATTAGCCCCGAAACATAGAACACCCCAT
ATACAATTTGCCAAACCCCAGAAAAATCCCCAACAAGGTAGACCCAATGG
GTGGAAAACTTCACTCCCTCCCTTAAAAACGGTAACAAAATACCCATCGA
AAAGGATTTATAN
NCGATTGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTGCAAGCTCATAAGCACCGGAG
AAAACACACTTAAAACAGATAAGAAGAAGAGTTATTAGCACATGGGCAAG
GAGTCAGAAAAATGACTGAAACGACCATCATATACTTGATATATTATGGT
TAAATTTAATCTACTGTAGTTATAAAACACTATAAATTTAATATACTCTA
ATGTGAGAAAAACAGAGCAATTCAGTACTGAGAAAAACTGCCTGAGATTT
CAGATGACTCTAGTAATTTATATTTAAAAACAAAACCACACCCGAATGAC
TATTAAGTCATTATTCTATGTACTTTTATGCAACATAATACTACTTTTCC
CAAAATGTTCATTTAGAAATAGATATCATAGGATCTTTTATTTAAAAAAA
ATGAGATTAATATAGCTAAATTCAATGATTTACAATGAGATTTCCCTTCT
ATGATAAAGACGTTCAGGTGTAGAAACTATATGAACGCAACAGTGTCTAC
ATCCTGAGAAGCTACAGGGATGTGTAAAATGAGGACCCCGGGAAGTAAGC
CTAGAGTGTGGCACACAAGACAGCTGAAGGAGGCCTTCAGAATGTCCCTT
ACTACTAAAGGGCGCACTGTCCTAGCGACACACACGGTACAGTTCGTTAC
AGTTCGGCACGGAGTCCTGGCAAGTGAACGGCTCCCCTGTTCTCATCGGG
GCCTCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_p10.g1 MSMg01no472_p10.g1 CHROMAT_FILE:
MSMg01no472_p10.g1 PHD_FILE: MSMg01no472_p10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:47 2005
         (240 letters)



>mm_chr18_68431196_68431832
          Length = 637

 Score =  439 bits (227), Expect = e-128
 Identities = 235/239 (98%), Gaps = 3/239 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgcaagctcataagcaccggagaaaacacacttaaaacagataagaagaagagttatta 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||   |||||||
Sbjct: 201 ctgcaagctcataagcactggagaaaacacacttaaaacagataagaaga---gttatta 257

                                                                       
Query: 61  gcacatgggcaaggagtcagaaaaatgactgaaacgaccatcatatacttgatatattat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gcacatgggcaaggagtcagaaaaatgactgaaacgaccatcatatacttgatatattat 317

                                                                       
Query: 121 ggttaaatttaatctactgtagttataaaacactataaatttaatatactctaatgtgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ggttaaatttaatctactgtagttataaaacactataaatttaatatactctaatgtgag 377

                                                                      
Query: 181 aaaaacagagcaattcagtactgagaaaaactgcctgagatttcagatgactctagtaa 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aaaaacagagcaattcagtactgagaaaaactgcctgagatttcagatgactctagtaa 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 637
Length adjustment: 9
Effective length of query: 231
Effective length of database: 628
Effective search space:   145068
Effective search space used:   145068
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)