Query= MSMg01no473_g08.b1 MSMg01no473_g08.b1 CHROMAT_FILE:
MSMg01no473_g08.b1 PHD_FILE: MSMg01no473_g08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:27 2005
(255 letters)
>mm_chr18_58476002_58476656
Length = 655
Score = 455 bits (235), Expect = e-132
Identities = 247/251 (98%)
Strand = Plus / Plus
Query: 1 tatatttgaattgatttatctctccctgtccaccaaggtccaccttcatcttgagtgtta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatatttgaattgatttatctctccctgtccaccaaggtccaccttcatcttgagtgtta 260
Query: 61 tataaaaataacattgtgaataaatccttaggctataattctcttgatctgaggggggat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tataaaaataacattgtgaataaatccttaggctataattctcttgatctgaggggggat 320
Query: 121 gggatagggagctttcgggggaggggggaaaccaggaaatgggtaacatttgaaatgtaa 180
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 321 gggatagggagctttcgggggagggggaaaaccaggatatgggtaacatttgaaatgtaa 380
Query: 181 ataaagaacatatctaataaaacttaagtatattaaaaatgtttagcccacaaaaaataa 240
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataaagaaaatatctaataaaaattaagtatattaaaaatgtttagcccacaaaaaataa 440
Query: 241 tctttctaatt 251
|||||||||||
Sbjct: 441 tctttctaatt 451
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 655
Length adjustment: 9
Effective length of query: 246
Effective length of database: 646
Effective search space: 158916
Effective search space used: 158916
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no473_g08.g1 MSMg01no473_g08.g1 CHROMAT_FILE:
MSMg01no473_g08.g1 PHD_FILE: MSMg01no473_g08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:27 2005
(436 letters)
>mm_chr18_58693765_58694600
Length = 836
Score = 658 bits (340), Expect = 0.0
Identities = 390/422 (92%), Gaps = 29/422 (6%)
Strand = Plus / Minus
Query: 1 ttcccattatcctttcccccaaagccagaggctggagcctaactcttgtttttattaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ttcccattatcctttcccccaaagccagaggctggagcctaactcttgtttttattaaca 334
Query: 61 tgtttattacatatcgaccatatccttgcatattttcatacatgcacacagcctgaatct 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 333 tgtttattacatatcgaccatatccttgcatattttcatacatgcacacagccttcatct 274
Query: 121 cttctgctttgttcttcctattccacatactcttactggttctagtaattactattgaat 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 273 cttctgctttgttcttcctattccacatactcttactgattctagtaattactattgaat 214
Query: 181 tttcaggtcaacatctttctttcttccttccttcctttctttctttctctctctctctct 240
||||||||||||||||||||||||||||||||||| |||
Sbjct: 213 tttcaggtcaacatctttctttcttccttccttcc---------ttc------------- 176
Query: 241 ctctctctctctctctctctctctctctctctctctctctctctctttctttctttcttt 300
|| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 175 ct-tc-ctctctctctctctctctctctctctctctctctctctc--tctttctttcttt 120
Query: 301 ctttcaacactactccgaattttattcccctcctagtccaccttcaaactgttccacatc 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 ctttcaac---actccgaattttattcccctcctagtccaccttcaaactgttccacatc 63
Query: 361 ccatacctcctccctgcccccctgtctccaggaaaatacccccaccctctcccctatccc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 ccatacctcctccctgcccccctgtctccaggaaaatacccccaccctctcccctatccc 3
Query: 421 at 422
||
Sbjct: 2 at 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 25
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space: 353129
Effective search space used: 353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
