BAC Information

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BAC

Clone NameMSMg01-475L07
Chromosome18 (Build37)
Map Location 57,745,247 - 57,917,916
singlet/doubletdoublet
Overlap gene1700011I03Rik, 2210409D07Rik
Upstream geneRnuxa, 1700065I17Rik, LOC675171, Lmnb1, March3, C330018D20Rik, Megf10, LOC672445, Prrc1, 4930511M06Rik
Downstream geneSlc12a2, 9330166H04Rik, Fbn2, Slc27a6, Isoc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475L07.T7 (MSMg01no475_l07.b1)MSMg01-475L07.TJ (MSMg01no475_l07.g1)
ACCAG557469AG557470
length791784
length of high quality
(start - end)
251 (79 - 329)245 (78 - 322)
definitionCHROMAT_FILE: MSMg01no475_l07.b1 PHD_FILE: MSMg01no475_l07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:34 2005CHROMAT_FILE: MSMg01no475_l07.g1 PHD_FILE: MSMg01no475_l07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,917,669 - 57,917,916)(57,745,247 - 57,745,489)
sequence
CCGTTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAAAATGC
GCGGAATTCCTGCCTNCTTTCATTTCTCTAGGGTAAAGACCCAGAGTGGC
ACTTCTGGGTTATAAAATAACATCTTAGGCAGAAAGGGCTTATTTTGGCT
CGTAGTTCCTGGGAACCCTCTTTCATGGGAAGGAAGTCACGGCAACAGTG
GGTTTCGGGAACTCATCGCCATGCCTGCAGATGCGAAGCAATTGCAATTA
GCCATTGACGATGTTTCTGCTTAACTTTTCAGAAAACTGTCAAATCGTTC
CCTCTCCCGCCACCAACAGCTGGATCTNGGTANTCTGGTAGAGCCACATT
CCTCTTGCCTATGCTTCTTATCCAGGCGCGGACATTCCTGGTTCTAAGTG
GCACAGGGCCCCATCAGTTTCAGCTTACACTTCCTGATGGCTGACTGTCT
TGAACAGCTTTTATGTTATCATTGGTTATTTCCCTGTTTCCTTTTGTGTA
GTGCCTGACTTTGCATTTACAAGTATCTTCCTAGCTTCCATTGTCTGCAT
TTTTTGCGTATTACGCCCCTACTATATATGGCACATATTCTCACCTATCC
TCCCTTCTTTCTTTCTTTTTTTCCCTTGTTTTCTCCCCCTCTTGTTTCCC
TCTAATTCTGGCTCTTCCATCCCTTTTTTTTTTTTCCTTGCATACTCCTC
CTCCTCTTTTTTCCTCCCAACTTTCTCTCTCTTCTTCATTTTCCCGCTTT
TTTTCTTCCCTCTCTTATTACCTCCTTGTACTTCCCTCTAC
CTCTCTCATGATATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGGCCCCTTAGTGGCAGAGGCCT
GGAGATGAGACTTCTATGCAGCATAGAAGTCAGGGTGTGAGTCACACTGT
GCACAGCTGCAAAAGATCAAGCGCTGCCCCACAGAACCATAGCATGTCAT
CAAAGAGTGATTGTCGTACCTTGCAGGCTTGTGGATTCCTCTCTCCTTCC
TTCTTTTTCCTTTGTGGAATGGGAATGCTTATATTGTGCCTGTTTGACTG
CTATAGTTTGAAGGCAATATTTTTTGTTGGGCTCACAAGCTACAGAAAAA
TATTTCTTCCATATGAACTGTCCTGAATCATACTAATATGTGATGTAGAT
GATACTTACATGAAACTTACACTTCTTAGCTGACGGTTGTGCCATCTTAC
AGTTTGGTCATTTGTTGACCTCATCTCTCTTTTGCCTACCTTCAACGTCC
ACCTTGTTTATTTATTTTACCCCCCCCCTTTTTTCTCCCCTACTTTCTCC
TCCTCCTTTTACTCCTTTTCCCCCCCCTCCTTTTCCCCCTTTTCCCCTCT
TCCTCTCTCCCTCCCTCCCTTCCCTTTCCCCTCCCCTTTTCCCCCCCCCC
TCCTCCCGCTACTTCATTTCTTTTTCTTTTCCCCTTTTCTTCTCCCTTTT
TCCCATTCCCTTCTCTCTTCTTTCTCCCCTTTATTCCTCTCCACACCTTT
CTCCCTCTTTCTCACCCTCTCCCCTTTTATCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_l07.b1 MSMg01no475_l07.b1 CHROMAT_FILE:
MSMg01no475_l07.b1 PHD_FILE: MSMg01no475_l07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:34 2005
         (251 letters)



>mm_chr18_57917349_57917999
          Length = 651

 Score =  456 bits (236), Expect = e-133
 Identities = 245/248 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagggtaaagacccagagtggcacttctgggttataaaataacatcttaggcagaaaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 568 tagggtaaagacccagagtggcacttctgggttataaaataacatcttagggagaaaggg 509

                                                                       
Query: 61  cttattttggctcgtagttcctgggaaccctctttcatgggaaggaagtcacggcaacag 120
            |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 508 tttattttggctcgtagttcctgggaaccctctttcatgggaaggaagtcatggcaacag 449

                                                                       
Query: 121 tgggtttcgggaactcatcgccatgcctgcagatgcgaagcaattgcaattagccattga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tgggtttcgggaactcatcgccatgcctgcagatgcgaagcaattgcaattagccattga 389

                                                                       
Query: 181 cgatgtttctgcttaacttttcagaaaactgtcaaatcgttccctctcccgccaccaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cgatgtttctgcttaacttttcagaaaactgtcaaatcgttccctctcccgccaccaaca 329

                   
Query: 241 gctggatc 248
           ||||||||
Sbjct: 328 gctggatc 321


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space:   155364
Effective search space used:   155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no475_l07.g1 MSMg01no475_l07.g1 CHROMAT_FILE:
MSMg01no475_l07.g1 PHD_FILE: MSMg01no475_l07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:34 2005
         (245 letters)



>mm_chr18_57745047_57745691
          Length = 645

 Score =  455 bits (235), Expect = e-132
 Identities = 241/243 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggccccttagtggcagaggcctggagatgagacttctatgcagcatagaagtcagggtg 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggcccctttgtggcagaggcctggagatgagacttctatgcagcatagaagtcagggtg 260

                                                                       
Query: 61  tgagtcacactgtgcacagctgcaaaagatcaagcgctgccccacagaaccatagcatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagtcacactgtgcacagctgcaaaagatcaagcgctgccccacagaaccatagcatgt 320

                                                                       
Query: 121 catcaaagagtgattgtcgtaccttgcaggcttgtggattcctctctccttccttctttt 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catcaaagagtgattgtcataccttgcaggcttgtggattcctctctccttccttctttt 380

                                                                       
Query: 181 tcctttgtggaatgggaatgcttatattgtgcctgtttgactgctatagtttgaaggcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctttgtggaatgggaatgcttatattgtgcctgtttgactgctatagtttgaaggcaa 440

              
Query: 241 tat 243
           |||
Sbjct: 441 tat 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)