BAC Information

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BAC

Clone NameMSMg01-475P03
Chromosome18 (Build37)
Map Location 60,677,268 - 60,677,501
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667549, EG240327, LOC546714, EG225594, F830016B08Rik, LOC667578, EG667584, LOC435565, Iigp1, EG629292, LOC667597, 2010002N04Rik
Downstream geneDctn4, Rbm22, Myoz3, Synpo, LOC100042675, Ndst1, Rps14, LOC667619, Cd74, Tcof1, LOC100042699, Arsi, Camk2a, Slc6a7, Cdx1, Pdgfrb, Csf1r, A630042L21Rik, Slc26a2, Pde6a, EG667279, Ppargc1b, LOC667675, 4933429F08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475P03.T7 (MSMg01no475_p03.b1)MSMg01-475P03.TJ (MSMg01no475_p03.g1)
ACCAG557653AG557654
length777737
length of high quality
(start - end)
484 (50 - 533)489 (85 - 573)
definitionCHROMAT_FILE: MSMg01no475_p03.b1 PHD_FILE: MSMg01no475_p03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:53 2005CHROMAT_FILE: MSMg01no475_p03.g1 PHD_FILE: MSMg01no475_p03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:53 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CCTTTCCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCC
GCGGAATTCTGTTTCATATCCCGTATCTCCTTGGTGCCTGGCTTCCTGTG
GTAACGGCAGACTGTACAACTGCCACTCCTGGTCCCAGGCTTCAGAAAGC
ACCATACTTTTACTAGCCATGGAGTACCATAATGTCCCTTTAGATTCACA
AGCAGACACACACACACACTTTTGAAAACAACTCCCATGAGCTTTTCTCA
AGTTACCAACTTTAGCTGTTAGGTATCTAGTTGGATAGTAGAGGCTTGAC
AATCATTAACCCACACACACAGCCGGAAGTCTGGGAGGCACTGAAGGGGG
TACTGATAGGCTTCTCTGAGGTCCGTTGCTGTAGAATACACAGAGGTATG
TCTATCTTCCAAGCAAGAAAGGAATACACGTACAACTTAGTACGTATTTT
AAGGAAACAAGTGAAATTGGTAACTGTACTTTAACATCGGGCTTCACAAT
AATTGCTGGTCTTCATTCCCGTGCTGACTTCCTCCCCTGCCTTTTCCCAT
AGCCAGGATGTGAACCGCCCAGCCGCATTGTACTTGTTTGTTGCACACCC
TGCGCTTCCCTGCTCTCGCTTATTCCCCCCTGTAAGGACCCCCTTTTCCT
TAGCCTTTTCTCATTCTTCCTCCCCTTTTTACCGCCCTACGATTAATCCA
GCCTGTTTCCCCCCCAATTTTATCCACTTTTTTTAACACCGTTTCTCCCC
CTCTCATTTCCATTCTTTACATTTATG
CCCCCTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCCATACCTAAA
CATGATAAAAGCAATCTACAGCAAACCAGTTGCCAACATCAAAGTAATTG
GTTAGAAGATGGAAGCATTCCCACTAAGATCAGGGACTAGACAAGGCTGC
CCACTTTCTCTCTACATATTCAACATAGTACTTGAAGTCCTATCCAGGCA
ATTCGACAACAAAAGGAGGTCAAGGGGATACAAATTGGAAAGGAAAAAGT
CAAAATATCACTTTTTGCAGATGATATGATAATATATATAAGTGACCCTA
AAAATTCCACCAGAGAACTTCTAAACCTGATAAACAGCTTCGGTGAAGTA
GCTGGATATAAAATTAACTCAAACAAATCAATAGCCTTTCTCTACACAAA
GAATAAACAGGCTGAGAAAGAAATTAGGAAAATAACACCCTTCTCAATAG
TCACAAATAATATAAAATACCTTGGCATGACTCTAAATAAGGAAGTGAAA
GATCTGTATGATAAGAACTTCCAGTCTCTAAAGAAAGAAATTAAGGAAGA
TCTTACAAGATGGAAAGATCTCTCATGCTCATGGATTGGGAGGATCAACT
TTGTAAAAAGGGGTATCTGGGCAAAAGCCATCCCAAGAATTCACGGCAGT
CCCCTCCAAAATTTCCCATCCACTTCTTCCCCGAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_p03.b1 MSMg01no475_p03.b1 CHROMAT_FILE:
MSMg01no475_p03.b1 PHD_FILE: MSMg01no475_p03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:53 2005
         (484 letters)



>mm_chr18_60677045_60677926
          Length = 882

 Score =  377 bits (195), Expect = e-109
 Identities = 229/249 (91%), Gaps = 15/249 (6%)
 Strand = Plus / Plus

                                                                       
Query: 24  gtatctccttggtgcctggcttcctgtggtaacggcagactgtacaactgccactcctgg 83
           |||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 224 gtatctccttggtgtctgccttcctgtggtaatggcagactgtacaactgccactcctgg 283

                                                                       
Query: 84  tcccaggcttcagaaagcaccatacttttactagccatggagtaccataatgtcccttta 143
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tcccaggcttcagaaaacaccatacttttactagccatggagtaccataatgtcccttta 343

                                                                       
Query: 144 gattcacaagcagacacacacacacacttttgaaaacaactcccatgagcttttctcaag 203
           |||||||||||||||||||||||||  ||||||||||||||||||             ||
Sbjct: 344 gattcacaagcagacacacacacac--ttttgaaaacaactccca-------------ag 388

                                                                       
Query: 204 ttaccaactttagctgttaggtatctagttggatagtagaggcttgacaatcattaaccc 263
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 389 ttaccaactttagctgttaggtatctagttggatagtagaggcttgacaatcattaacac 448

                    
Query: 264 acacacaca 272
           |||||||||
Sbjct: 449 acacacaca 457


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 882
Length adjustment: 10
Effective length of query: 474
Effective length of database: 872
Effective search space:   413328
Effective search space used:   413328
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)